HsaEX1006782 @ hg38
Exon Skipping
Gene
ENSG00000167535 | CACNB3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:1403]
Coordinates
chr12:48816873-48823466:+
Coord C1 exon
chr12:48816873-48816995
Coord A exon
chr12:48817370-48817514
Coord C2 exon
chr12:48823344-48823466
Length
145 bp
Sequences
Splice sites
3' ss Seq
GATTTCTGATTCTCCTCAAGCCA
3' ss Score
3.29
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCCATCTCCCAGGAGAAGAGCACCTTGAGGGTCTTACTCTTTGACACCTCTCCAGGCCCCTGAAAGAAGGAATTGAAGAGAAAGGATGAAAGAGGGGGATACAAGGAATACTGCGTAACTGG
Seq A exon
CCAAGGAGGGATGAGCAGATTGCTGAACTCCCGGGTGTGAGAAATTGGGAAGGAAAAGGACTGAGCTCAGGGCCAAGAGCATGGGCACCAGGAGGCCTCCAAGTGTAACCCCTGTCTACGCACATCCTCCTCGTGGGGCACAAAG
Seq C2 exon
GGTTCAGCCGACTCCTACACCAGCCGCCCATCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGTGAAGTAGAGAGCCAGGCTCAGCAGCAGCTCGAAAGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167535_MULTIEX1-2/4=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.686 C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Main Inclusion Isoform:
ENST00000536187fB11193
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGAGCACCTTGAGGG
R:
CTTGGCCCTTTCGAGCTGC
Band lengths:
235-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains