HsaEX1006783 @ hg38
Exon Skipping
Gene
ENSG00000167535 | CACNB3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:1403]
Coordinates
chr12:48817370-48823466:+
Coord C1 exon
chr12:48817370-48817514
Coord A exon
chr12:48818385-48818974
Coord C2 exon
chr12:48823344-48823466
Length
590 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTCCCCCGCCGCAGCCC
3' ss Score
8.66
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCAAGGAGGGATGAGCAGATTGCTGAACTCCCGGGTGTGAGAAATTGGGAAGGAAAAGGACTGAGCTCAGGGCCAAGAGCATGGGCACCAGGAGGCCTCCAAGTGTAACCCCTGTCTACGCACATCCTCCTCGTGGGGCACAAAG
Seq A exon
CCCTTTGTTTCCCGGCGGAGTAGTTCCTGGGTTGCCGAGCGTCTCTGTCTCCGCATCTCTCCTCGCCCCGCCTCCTCCCTGCCTGGATCCGCCCTGCCCGCAGCCTCTCCTCCCCTTCCTCCCCGCCGCCACGGCCCCGTAGGTGCTCGGGGACCCACCTTCCACCTAGCACGGGTTCGTTCCCCTCTCCCGGCCTGGCCCGGGCTCCCCGGTGGCCGCCGCCCCCTCGCCGCCCCCGCCTTCTCCCGGGGAGGGGGTCAGGTGGGCGGGCACTATTGTTGTAGGAGCCGGCGCCAGATTCCTCAGCCGCGCTCGGGGTGGGACCGGCTGGGTTTGGGGGGGTGGGGTGGGGGGAGCGGTGATCTGAGCTCCGAGCAGCTGGTCTTCGCGGCTCGCTCCCTCCTTCGCGCTCTCTCGCTCCCTGCCGCCGCCCGCAGGGCTGCGGGGCTCGGTGGCATCTCCCGGGCGCGGCCCGCAGTCCTTGCCCCTGCCTCCGGGCCGCTCCCGCCCCCGGCGCCGCTCGCTCCCCCGACCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq C2 exon
GGTTCAGCCGACTCCTACACCAGCCGCCCATCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGTGAAGTAGAGAGCCAGGCTCAGCAGCAGCTCGAAAGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167535_MULTIEX1-3/4=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=0.546 C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGGATGAGCAGATTGC
R:
CTTGGCCCTTTCGAGCTGC
Band lengths:
266-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains