MmuEX1005580 @ mm10
Exon Skipping
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98631274-98639610:+
Coord C1 exon
chr15:98631274-98631426
Coord A exon
chr15:98634436-98635213
Coord C2 exon
chr15:98639488-98639610
Length
778 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTGGGTGTCTCCAGGAC
3' ss Score
9.5
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AACTTGGGCTTGTCCGCTTTGACGTGCCCGCCGGAGGGGACGAGAAGGGGTACTGACCCGAGAAGCGGTCCTGCGACTTTGTGCTCTCTGCTGCCCAGACTGAGCTGGGATGCTGCCTGGCTTGCCCGGGCTCGCCCTGAGACCAGGATGGAG
Seq A exon
GACTTGCAGAGAGCTGACATTGCCGGATCACCTGAGACCTCTTCCCCATCTGCTGTCCGTCCTCCTTTAGATCTCCATTTTCCTGTCTCCGCGTTCTCCCTGCCTCCAGTCCTCCTCTCTCTCCAGCCATCCTCCCCGCCGCCCGCACCCTCTCGATTCTCCACCGGGCTCGCGTCTGGTTGCGGCGTCTCTCCCCTTCCCCTCCCCCGCGCCAGCCCTTTGTTTCCCGGCGGAGCAGTTCCTGGGTTGCGAGAGTCCCTGTCTCTGCATCTCTCCTCGCCCCGCCTCCTCCCCGCCGGGATCCGCCCCGCCTGCAGCCTCTCCGCCCTTCTTCCCCGCCGCCCCGGCCCCGGAGGTGCCGGGGACCCACCTTCCCGACTCGCGTGCGCCCGGTTCCGCGGCCCCGGCGGGTCCCCCCTGGCTGCCGCGCCCCCGCCGCCCGCGTCTTCCCGGGAGGGGGTCAGGTGGGCGGGCACTATTGTTGTGGGAGCCGGCGGCAGATTCCTCAGCCGCGCTGGCGCGCTCGGGGTGGGACCGGCTGGGCTGGGGGGTGGGGAGGGGAGCGGTGATCTGAGCTGCGAGCAGCTGGTCTTCGCGGCTCGCTCCTTCCTTCGCGCTCGCGCTCTCCGCCGCCGCCGCCCGCAGGGCTGCGCGGCTCGGTGGCATCTCGGGCGCGGCCCGCCGTCCTCGCCCCCGGCGCCGCTCGCTCCCCCCACCCACCCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq C2 exon
GGTTCAGCCGACTCCTACACCAGCCGCCCCTCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGAGAAGTGGAGAGTCAGGCTCAGCAGCAGCTGGAAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.467 C2=0.878
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGGGCTTGTCCGCTTTG
R:
CTTGGCTCTTTCCAGCTGCTG
Band lengths:
276-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types