RnoEX0016186 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140312088-140319867:+
Coord C1 exon
chr7:140312088-140312832
Coord A exon
chr7:140314730-140315502
Coord C2 exon
chr7:140319745-140319867
Length
773 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTGGGTGTCTCCAGGAC
3' ss Score
9.5
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AACCCAACCTCCCCCTAAAGCCTGCCTTTGAACCTTCCCTGCCCTCTGCCTGAGGTGGCAGAGCTCCACAGACCCTGTCTTTTCTGGAGACCGGGTGGAGGGGGAGGGGAAGACTGGGTGGGAAAGAGGGGTTGTGATGGAAGGACTGTGGGGGACACCGGATGAATAGGGAATAGGGTGGTAGAGAGGCAAGACTTAAGTGGAGACACACTGGACTGAAAGACGAGGGAAGTGCAAGAGAAATTGAAGGAGGAGGCTAGAAAGAAAGGGAGGAGGGAAGAGGAGGAGGAAAAGGGGTGGAACCAGGAGCGAGGAGAGGGAGCGGGCGGCAGGAGCTGGGCGGGCGCGGGGCGAGGCCAGGCGTGCAGGCTGGAGCGGTGTGCAGAGCCGCGGCCGGGTCCCGCTCCCGCCTCGGAGCCCCTGGCCCGGGGGAGGGAGAGAGGCCGCTAACCCGGTCTATGTCTTTTTCTGACTCCAGTGCAACCTTCCTGCTGAACGAG
Seq A exon
GACTTCCAGGGAGCCGACATTGCCGGATCACCTGAGACCTCTCCCCATCTGCTGCCCGTCCTCCTTTCGATCTCCATTTTTCTGTCTCCGCGTTCTCCCAGCCTGCAGTCCTCCTCTCCCTCCAGCCATCCTTCCCGCCGCCCGCACCCTCTCGATTCTCCCCCGGGGTCGCGTCTCCTCGCCGCGTCTCTCCCCTTCCCCTCCCCCGCGCCAGCCCTTTGTTTCCCGGCGGAGCAGTTCCTGGGTTGCGAGAGTCCCTGTCTCCGCATCTCTCCTCGCCCCGCCTCCTCCTCGCCGGGATCCGCCCCGCCTGCAGCCTCTCCGCCCTTCTTCCCCGCCGCCCCGGCCCCGGAGGTGCCGGGGACCCACCTTCCCGACTCGCGTGCGCCCGCTTCCGCGGCCCCGGCGGGTCCCCCAACCGCCGCGCCCCCGCCGCCCGCGTCTTCCCGGGAGGGGGTCAGGTGGGCGGGCACTATTGTTGTAGGAGCCGGCGGCAGATTCCTCAGCCGCGCTGGCGCGCTCGGGGTGGGACCGGCTGGGCTGGGGGGTGGGGAGGGGAGCGGTGATCTGAGCTGCGAGCAGCTGGTCTTCGCGGCTCGCTCCTTCCTTCGCGCTCGCGCTCTCCGCCGCCGCCCGCAGGGCTGCGCGGCTCGGTGGCATCTCGGGCGCGGCCCGCCGTCCTCGCCCCCGGCGCCGCTCGCTCCCCCCACCCCACCCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq C2 exon
GGTTCAGCCGACTCCTACACCAGCCGCCCCTCTCTGGACTCAGACGTTTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGAGAAGTGGAGAGTCAGGCTCAGCAGCAGCTGGAAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.976
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTAGAGAGGCAAGACT
R:
CTGGTGTAGGAGTCGGCTGAA
Band lengths:
348-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]