HsaEX1007286 @ hg38
Exon Skipping
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16734690-16761718:+
Coord C1 exon
chr17:16734690-16735643
Coord A exon
chr17:16737538-16737675
Coord C2 exon
chr17:16761425-16761718
Length
138 bp
Sequences
Splice sites
3' ss Seq
AACAAAAAATACCTTCACAGGTA
3' ss Score
5.33
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TGTCTGGCCTACAAGCTAAGAATGAGATTCTTTCTGAAAAACTTTCTAATGCTGAAAGTAAAATTAACAGCCTACAAATTCAGCTCCATAACACAAGAGATGCTCTTGGAAGAGAGAGTTTGATTTTGGAACGTGTGCAAAGAGACCTCAGCCAAACACAGTGTCAGAAGAAAGAAACTGAACAAATGTACCAAATTGAACAAAGCAAACTGAAGAAATACATTGCCAAGCAGGAATCTGTAGAGGAGAGATTATCTCAACTACAAAGTGAAAATATGTTGCTTCGACAGCAACTGGATGATGCTCACAAGAAAGCTAACAGTCAAGAAAAGACAAGCAGTACTATCCAAGACCAGTTTCATTCTGCTGCCAAAAATCTTCAAGCTGAGAGTGAAAAGCAGATTCTTTCACTACAAGAGAAGAACAAGGAGCTGATGGATGAATATAATCATTTAAAAGAAAGAATGGATCAATGTGAGAAAGAGAAAGCAGGAAGAAAA
Seq A exon
GTAGTTATGAGAGAATTCCAACAAGAATGGACCGATCTCCTAAAACAACAACCTACGTCAGAGGCTACCTCACGTTGTCACATTAATTTAGATGAGACACAGGATTCAAAGAAGAAATTGGGTCAAATCAGAAGTGAA
Seq C2 exon
ATTGACCTTACAGAAGCACAGGAAACTGTACCTTCACGATGTCTACATCTGGATGCAGAGAATGAAGTTCTTCAACTTCAACAGACATTATTCTCTATGAAAGCAATACAAAAGCAATGTGAAACACTACAGAAGAATAAGAAGCAGCTGAAACAAGAAGTAGTAAACCTCAAAAGTTATATGGAAAGAAATATGTTAGAACGTGGTAAAGCTGAATGGCATAAACTGTTGATTGAAGAAAGAGCAAGGAAGGAGATAGAAGAAAAATTAAACGAAGCCATTCTCACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.457 C2=0.037
Domain overlap (PFAM):
C1:
PF149151=CCDC144C=WD(100=95.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACAGCAACTGGATGATGC
R:
CAGTTTCCTGTGCTTCTGTAAGGT
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains