HsaEX1008780 @ hg38
Exon Skipping
Gene
ENSG00000117971 | CHRNB4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1964]
Coordinates
chr15:78649379-78655663:-
Coord C1 exon
chr15:78655544-78655663
Coord A exon
chr15:78652578-78652671
Coord C2 exon
chr15:78649379-78649439
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACCTTCATTACCATCTATAGATG
3' ss Score
6.32
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGTCTCGCTCTGTTGCTCGAGCTGGAGTGTGGTAGCACCATCGTGGCTCACTGCAGCCTTGACCTCCCCTGGATCAAGCGATCCTCCTACCTCAGCCTCCCAAGTGGCTGGGACCAATAG
Seq A exon
ATGGAAAGTCGTGGAGTCACCAGGCCGGAAGTGCCGTGGAGGAAACTCACTCCAATCTGCTGCATGAAGAGAGGATTCTCTGAGACTGAGCAAG
Seq C2 exon
CTCCAGATTTGGCAGATGGGCGGTAGTTTGCTGGCCCCAGCTCCAGATCATATTGTATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117971_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGCTCTGTTGCTCGAG
R:
ATATGATCTGGAGCTGGGGCC
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains