HsaEX7008604 @ hg38
Exon Skipping
Gene
ENSG00000117971 | CHRNB4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1964]
Coordinates
chr15:78635439-78652671:-
Coord C1 exon
chr15:78652578-78652671
Coord A exon
chr15:78649379-78649439
Coord C2 exon
chr15:78635439-78635587
Length
61 bp
Sequences
Splice sites
3' ss Seq
ATAAAAACCATTCTTCTTAGCTC
3' ss Score
2.58
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATGGAAAGTCGTGGAGTCACCAGGCCGGAAGTGCCGTGGAGGAAACTCACTCCAATCTGCTGCATGAAGAGAGGATTCTCTGAGACTGAGCAAG
Seq A exon
CTCCAGATTTGGCAGATGGGCGGTAGTTTGCTGGCCCCAGCTCCAGATCATATTGTATTAT
Seq C2 exon
GGAACTGCCGCGTGGCCAATGCGGAGGAAAAGCTGATGGACGACCTTCTGAACAAAACCCGTTACAATAACCTGATCCGCCCAGCCACCAGCTCCTCACAGCTCATCTCCATCAAGCTGCAGCTCTCCCTGGCCCAGCTTATCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117971-'16-26,'16-20,17-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0293118=Neur_chan_LBD=PU(19.9=82.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAAGTCGTGGAGTCACC
R:
CCATCAGCTTTTCCTCCGCAT
Band lengths:
133-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains