HsaEX1009363 @ hg38
Exon Skipping
Gene
ENSG00000050767 | COL23A1
Description
collagen type XXIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr5:178288324-178306919:-
Coord C1 exon
chr5:178306875-178306919
Coord A exon
chr5:178290362-178290369
Coord C2 exon
chr5:178288324-178288350
Length
8 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTTGTGTTTTGCAGGTC
3' ss Score
12.13
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGCCCCCTGGACGGCGCGGCAAGCCTGGGAGAAGAGGCGACCCTG
Seq A exon
GTCCTCCA
Seq C2 exon
GGGCAATCAGGACGAGATGGCTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050767-MICROEX1-1/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.3=100)
A:
PF0139113=Collagen=FE(3.5=100)
C2:
PF0139113=Collagen=FE(14.0=100),PF0139113=Collagen=PU(6.0=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains