MmuEX1007260 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51517206-51527894:+
Coord C1 exon
chr11:51517206-51517250
Coord A exon
chr11:51525952-51525959
Coord C2 exon
chr11:51527868-51527894
Length
8 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTGTGTTTTGCAGGTC
3' ss Score
12.7
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTCCCCCTGGACGGCGTGGCAAGCCTGGACGAAGAGGCGACCCTG
Seq A exon
GTCCTCCA
Seq C2 exon
GGGCAATCAGGACGAGATGGCTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564-MICROEX1-1/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.8=100)
A:
PF0139113=Collagen=FE(3.6=100)
C2:
PF0139113=Collagen=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types