HsaEX1010647 @ hg38
Exon Skipping
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin like [Source:HGNC Symbol;Acc:HGNC:2524]
Coordinates
chr16:67930920-67932414:-
Coord C1 exon
chr16:67931801-67932414
Coord A exon
chr16:67931098-67931201
Coord C2 exon
chr16:67930920-67930999
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCATTAGCCCAATGGCCAGGCT
3' ss Score
-4.08
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
CCCCTGGCCCTTCACAGCAAAGTTGACCGCAGTGAGCATTCCATCCACCAGTCAGAACACCCTGGACGCTGAGCGGCCTTCTCTGAAAGCCTGGTGCCTTTGTTAGCCCTGGGTGACTCCTGTGATCCCAGCCACCAGGTTGTCACTATAGACCTAATTTAACCATCTGTCCTCAGTACCGAGGGCTCAACATTTGGAATGGGAGGTGGTTCTGGGAGCCAATTAGAGGCCAGGCTTTGGGAGGTGGCAGAGGTGAGTCTCACACCTGGGCTCTGTCTGATAAGTCTAGGTCTCGGTCAGGGGACCTTGGCCTAAAGGGCCTGTCTTGCCTGGAGCGTGGGAGGGGGCTGAGTCTACACAGCTGGCCTGGCCTCAGGCCTGGAGCTTTAGCTCAAGGACGAGAAGACCCATAAAGCCAGACCCAGCTCCCAACCTCACATCTGCCACGATGTTGCTGCTCAGCCTGACCCTAAGCCTGGTTCTCCTCGGCTCCTCCTGGG
Seq A exon
GCTGCGGCATTCCTGCCATCAAACCGGCACTGAGCTTCAGCCAGAGGATTGTCAACGGGGAGAATGCAGTGTTGGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
GACAGCAGCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGCCAGTCCTGGGTGGTCACTGCTGCCCACTGCAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(14.2=51.4)
C2:
PF0008921=Trypsin=FE(20.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTAGGTCTCGGTCAGGG
R:
GAGAGAACCACCGCAGAAGTG
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains