RnoEX0025269 @ rn6
Exon Skipping
Gene
ENSRNOG00000019353 | Ctrl
Description
chymotrypsin-like [Source:RGD Symbol;Acc:621501]
Coordinates
chr19:37906837-37907714:-
Coord C1 exon
chr19:37907660-37907714
Coord A exon
chr19:37907006-37907109
Coord C2 exon
chr19:37906837-37906916
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCACCAGCCCTTTGTTCAGGCT
3' ss Score
2.38
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ACAATGCTACTGCTCAGCCTAACCCTTAGCCTGGTCCTTCTTGGCTCCTCCTGGG
Seq A exon
GCTGTGGTGTTCCCGCCATCACACCTGCACTGAGCTACAACCAGAGGATTGTCAACGGGGAGAATGCAGTGCCAGGCTCCTGGCCCTGGCAAGTGTCTCTGCAG
Seq C2 exon
GATAACACCGGCTTCCACTTCTGTGGTGGTTCTCTCATTGCCCCAAACTGGGTGGTCACGGCTGCCCACTGCAAAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019353-'3-1,'3-0,4-1
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.0=51.4)
C2:
PF0008921=Trypsin=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTGCTCAGCCTAACCCT
R:
CAGCCGTGACCACCCAGTTT
Band lengths:
114-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]