DreEX6077899 @ danRer10
Exon Skipping
Gene
ENSDARG00000068680 | ctrl
Description
chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
Coordinates
chr15:37926171-37927575:-
Coord C1 exon
chr15:37927511-37927575
Coord A exon
chr15:37926372-37926475
Coord C2 exon
chr15:37926171-37926250
Length
104 bp
Sequences
Splice sites
3' ss Seq
CATTAATTTCCTTCTCACAGGCT
3' ss Score
8.77
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAAATTATAAGTCTCCAAAATGCTCTGGATCATTAGCTGTTTTGCTTTGGTGGCCTCCACTCTGG
Seq A exon
GCTGTGGAGTGCCAGCCATTAAGCCTGTTATTAGTGGCTACAACAGAATTGTGAATGGAGAGAATGCAGTGTCTGGCTCCTGGCCCTGGCAGGTCTCTCTCCAG
Seq C2 exon
CAATCCAATGGCTTCCATTTCTGCGGTGGATCCCTGATCAACCAGTATTGGGTTGTCACCGCTGCCCACTGCCGTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068680-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(10.1=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTCTCCAAAATGCTCTGGA
R:
CAGTGGGCAGCGGTGACA
Band lengths:
130-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]