GgaEX7008082 @ galGal4
Exon Skipping
Description
chymotrypsinogen 2-like precursor [Source:RefSeq peptide;Acc:NP_001264565]
Coordinates
chr11:1960454-1960900:-
Coord C1 exon
chr11:1960846-1960900
Coord A exon
chr11:1960632-1960735
Coord C2 exon
chr11:1960454-1960533
Length
104 bp
Sequences
Splice sites
3' ss Seq
CGGTTGTCCCCGTCCCGCAGGCT
3' ss Score
10.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAATGGCTCTGCTGTGGCTGCTGGGCTGCCTGGTGCTGGCGGGCTCTGCCCGTG
Seq A exon
GCTGCGGTGTGCCCGCCATCACGCCCGTCATCCGTGGCTACAACCGCATCGTGAACGGGGAGCCGGCGGTGCCCGGGTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
CGCTACGGCAACTTCCACTTCTGCGGCGGGTCGCTGATCAGCGAGCAATGGGTGGTCACTGCTGCCCACTGCGGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000038-'1-1,'1-0,3-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.1=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCTCTGCTGTGGCTG
R:
GCAGTGGGCAGCAGTGAC
Band lengths:
126-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]