RnoEX6060707 @ rn6
Exon Skipping
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43908498-43911057:-
Coord C1 exon
chr19:43910969-43911057
Coord A exon
chr19:43908666-43908769
Coord C2 exon
chr19:43908498-43908577
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGCTACTATTCCCTTCCCAGGCT
3' ss Score
6.74
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGTAGGCAAGCTTCACTCACTCCCTTGACCAGCACCATGGCATTCCTTTGGCTCCTGTCCTGCTTTGCCCTTGTGGGGGCCACCTTTG
Seq A exon
GCTGTGGAGTCCCTACCATCCAACCCGTGCTGACTGGCCTGTCCAGGATCGTCAACGGAGAGGATGCTATTCCCGGCTCCTGGCCCTGGCAGGTGTCTCTGCAG
Seq C2 exon
GATAAAACTGGCTTCCATTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACTGCTGCCCACTGCGGGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068-'0-1,'0-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.1=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAGGCAAGCTTCACTCAC
R:
CGCAGTGGGCAGCAGTGA
Band lengths:
162-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]