DreEX0024941 @ danRer10
Exon Skipping
Gene
ENSDARG00000090428 | ctrb1
Description
chymotrypsinogen B1 [Source:ZFIN;Acc:ZDB-GENE-030131-1171]
Coordinates
chr7:34796558-34804828:+
Coord C1 exon
chr7:34796558-34796621
Coord A exon
chr7:34796721-34796824
Coord C2 exon
chr7:34804725-34804828
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTTTTTATTCTGAAGGCT
3' ss Score
5.85
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGTGACTCAGAAATGGCTTTCGTCTGGATTTTGTCGTGCCTTGCCTTGATTGGAACAGCATATG
Seq A exon
GCTGTGGCGTTCCTGCCATCCCTCCTGTTATTACCGGTTATGCCAGGATTGTAAACGGTGAGGAGGCTGTCCCTCATTCCTGGCCCTGGCAGGTGTCTCTGCAG
Seq C2 exon
GCTGTGGCGTTCCTGCCATCCCTCCAGTTGTTACCGGCTACGCCAGGATTGTGAATGGTGAGGAGGCTCGTCCTCATTCCTGGCCTTGGCAGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090428_MULTIEX1-1/8=C1-5
Average complexity
C3
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(8.1=51.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACTCAGAAATGGCTTTCG
R:
CTGCCAAGGCCAGGAATGAG
Band lengths:
156-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]