MmuEX6038623 @ mm9
Exon Skipping
Gene
ENSMUSG00000031957 | Ctrb1
Description
chymotrypsinogen B1 [Source:MGI Symbol;Acc:MGI:88559]
Coordinates
chr8:114213225-114214910:-
Coord C1 exon
chr8:114214841-114214910
Coord A exon
chr8:114213397-114213500
Coord C2 exon
chr8:114213225-114213304
Length
104 bp
Sequences
Splice sites
3' ss Seq
GACTACCACTGTCTCCCCAGGCT
3' ss Score
7.82
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTCCCTTCACCAGCACCATGGCATTCCTTTGGCTTGTGTCCTGCTTTGCCCTTGTGGGCGCCACCTTTG
Seq A exon
GCTGTGGGGTCCCTGCCATCCAACCCGTGCTGACCGGTCTGTCCAGGATCGTCAACGGAGAGGATGCTATCCCTGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq C2 exon
GACAGAACTGGCTTCCATTTCTGCGGGGGCTCCCTCATCAGCGAAAACTGGGTGGTCACTGCTGCCCACTGCGGGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031957-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(8.1=51.4)
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTTCACCAGCACCATG
R:
GCAGTGGGCAGCAGTGAC
Band lengths:
142-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: