HsaEX1010898 @ hg38
Exon Skipping
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450 family 4 subfamily F member 2 [Source:HGNC Symbol;Acc:HGNC:2645]
Coordinates
chr19:15892309-15897612:-
Coord C1 exon
chr19:15897414-15897612
Coord A exon
chr19:15895506-15895650
Coord C2 exon
chr19:15892309-15892582
Length
145 bp
Sequences
Splice sites
3' ss Seq
GACCCCTGCCTTGCTTGCAGGTC
3' ss Score
9.87
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GATGTCCCAGCTGAGCCTGTCCTGGCTGGGCCTCTGGCCAGTGGCAGCATCCCCTTGGCTGCTCCTCCTGCTGGTCGGGGCCTCCTGGCTCCTGGCCCATGTCCTGGCCTGGACCTACGCCTTCTATGACAACTGCCGCCGCCTTCGGTGTTTCCCACAACCCCCAAGACGGAACTGGTTTTGGGGACACCAGGGCATG
Seq A exon
GTCAACCCCACAGAGGAGGGCATGAGAGTTCTGACTCAGCTGGTGGCCACCTACCCCCAGGGCTTTAAGGTCTGGATGGGACCCATCTCCCCCCTCCTCAGTTTGTGCCACCCCGACATCATCCGGTCTGTCATCAACGCCTCAG
Seq C2 exon
CTGCCATTGCACCAAAGGACAAGTTCTTCTACAGCTTCCTGGAGCCCTGGCTGGGTGAGTATCTGCAGGTGAACAGGGTTGGGAAAAACGTTGGGGGGCCAGGGGAGGGAGAGGTCCTTGCCCATGGCCCTTGGCTGCCCTGCTAGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCCGCCACCGTCGGATGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATGAAGATTTTCAATGAGAGTGTGAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115-'1-4,'1-2,3-4
Average complexity
S
Mappability confidence:
100%=100=60%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(11.1=21.2)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(33.3=100)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGGAACTGGTTTTGGGG
R:
TTGAAATGGAAGGCAGGCGTC
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains