HsaEX1011862 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21658798-21683944:+
Coord C1 exon
chr7:21658798-21659031
Coord A exon
chr7:21681546-21681677
Coord C2 exon
chr7:21683784-21683944
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAAAAAATGATTCCTTCTAGATT
3' ss Score
6.39
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTGGAAACATGGCTTCTGCAACTTGAACAGACTATGCAAGAAACGGTGCGTCATTCTATAACAGAAGCCATAGTGGCCTACGAGGAAAAACCTAGGGAACTGTGGATTTTTGATTTCCCAGCTCAGGTTGCACTAACCAGCTCACAAATATGGTGGACCACAGATGTAGGAATAGCCTTCAGTAGACTGGAAGAAGGCTACGAAACAGCCCTGAAGGATTTCCATAAAAAACAG
Seq A exon
ATTTCTCAGCTGAATACACTGATTACACTTTTGCTGGGAGAACTTCCACCTGGAGACAGACAGAAGATCATGACAATTTGTACCATAGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAG
Seq C2 exon
GTTGTCAGTCCCCAAGCTTTTACATGGCTGTCTCAACTTCGTCACCGATGGGAGGATACCCAGAAACACTGCTTTGTTAATATTTGTGATGCCCAGTTCCAGTACTTCTATGAATACTTAGGAAACAGCCCTCGACTAGTGATCACTCCTCTAACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'52-51,'52-48,53-51
Average complexity
C1
Mappability confidence:
80%=100=67%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=34.6)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCTCAGGTTGCACTAAC
R:
ACTAGTCGAGGGCTGTTTCCT
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains