MmuEX6083421 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119302264-119321137:-
Coord C1 exon
chr12:119320904-119321137
Coord A exon
chr12:119306502-119306633
Coord C2 exon
chr12:119302264-119302424
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAAAAAAAAAATCTGTCTAGATT
3' ss Score
2.26
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTGGAAAGCTGGCTTCTGCAACTCGAACAGACCATGAAGGACACAGTGCGTCTGGCAATCACAGAAGCCATCACAGCCTATGAGGAGAAACCTAGAGAGCTCTGGATCTTTGATTTCCCAGCTCAGGTGGCTCTAACTGGATCACAAATATGGTGGACCACAGACGTAGGAATTGCCTTCAGTCGACTAGAGGAGGGCTATGAAACAGCCTTGAAGGATTTCCATAAGAAACAG
Seq A exon
ATTTCACAGCTGAATACACTGATCACACTTCTTCTGGGAGAACTTTCGCCTGGAGACAGGCAGAAGGTCATGACCATCTGCACCATTGATGTCCATGCCAGAGATGTGGTGGCAAAATTGATTTCTCAGAAG
Seq C2 exon
GTTGTCAGCCCCCATGCTTTTACCTGGCTGTCTCAACTCCGACACGAGTGGGAGGATTCAAGGAAACACTGCGTTGTTAATATTTGTGACGCCCACTTCCAGTACTTCTACGAATACTTGGGAAACAGTCCACGGCTGGTGATCACTCCTCTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(6.5=34.6)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTGCAACTCGAACAGA
R:
ACAGCCAGGTAAAAGCATGGG
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: