HsaEX1019369 @ hg38
Exon Skipping
Gene
ENSG00000058085 | LAMC2
Description
laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr1:183240292-183259223:+
Coord C1 exon
chr1:183240292-183240391
Coord A exon
chr1:183243147-183243468
Coord C2 exon
chr1:183258722-183259223
Length
322 bp
Sequences
Splice sites
3' ss Seq
TGTCTCATTCCTTGAAATAGACC
3' ss Score
6.2
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTGATTACAGAAGCCCAGAAGGTTGATACCAGAGCCAAGAACGCTGGGGTTACAATCCAAGACACACTCAACACATTAGACGGCCTCCTGCATCTGATGG
Seq A exon
ACCAGCCTCTCAGTGTAGATGAAGAGGGGCTGGTCTTACTGGAGCAGAAGCTTTCCCGAGCCAAGACCCAGATCAACAGCCAACTGCGGCCCATGATGTCAGAGCTGGAAGAGAGGGCACGTCAGCAGAGGGGCCACCTCCATTTGCTGGAGACAAGCATAGATGGGATTCTGGCTGATGTGAAGAACTTGGAGAACATTAGGGACAACCTGCCCCCAGGCTGCTACAATACCCAGGCTCTTGAGCAACAGTGAAGCTGCCATAAATATTTCTCAACTGAGGTTCTTGGGATACAGATCTCAGGGCTCGGGAGCCATGTCAT
Seq C2 exon
ACCCTGCACTTGATGGACCAGCTGGCACCACCCAGATCAATAAACTGGCTTATTTGAATTTGCGGCCCCCCACCCAGGAACTGACTCAGTGCAAGAAGACAGCTTCGACTCCCTGTGATTTCATCTCTGACCAATCCGCACTCCTGGCTCACTGGCTTCCCCAACCCATGAAGTTTTCCTTAAAAACTCTGCTCCCGAAATGCTCAGGGAGACTGATTTGATAACAATAAAACTCTGGTCTCCCGCACAGCCGGCTCTGCGTGAATTACTCTTTCTCTATTGCAATTCCCCTGTCTTGATGAATCTGCTCTGTCTAGGCAGCGAGCAAGGTGAACCCCTTGGGTGGTTACACCCTGACCTTGCAAGCTAGGTCCCTAAGTGCCTCCTCACATAGTTTTTGAAAAAGTGTGTATACCTGTGGCTCTGAAGCAGATTCCTAAGCCCACCCCCCATATATTCTGACTCAGTGGGACTGGGCAGGACACAGGAATTTGTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000058085_MULTIEX1-1/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.429 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCAGAGCCAAGAACGCTG
R:
GAGTAATTCACGCAGAGCCGG
Band lengths:
346-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains