HsaINT1018014 @ hg38
Intron Retention
Gene
ENSG00000058085 | LAMC2
Description
laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr1:183240292-183244900:+
Coord C1 exon
chr1:183240292-183240391
Coord A exon
chr1:183240392-183243146
Coord C2 exon
chr1:183243147-183244900
Length
2755 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TGTCTCATTCCTTGAAATAGACC
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTGATTACAGAAGCCCAGAAGGTTGATACCAGAGCCAAGAACGCTGGGGTTACAATCCAAGACACACTCAACACATTAGACGGCCTCCTGCATCTGATGG
Seq A exon
GTATGTGAACCCACAACCCACAACCTTCCAGCTCCATGCTCCAGGGCTTTGCTCCAGAACACTCACTATACCTAGCCCCAGCAAAGGGGAGTCTCAGCTTTCCTTAAGGATATCAGTAAATGTGCTTTGTTTCCAGGCCCAGATAACTTTCGGCAGGTTCCCTTACATTTACTGGACCCTGTTTTACCGTTGCTAAGATGGGTCACTGAACACCTATTGCACTTGGGGGTAAAGGTCTGTGGGCCAAAGAACAGGTGTATATAAGCAACTTCACAGAACACGAGACAGCTTGGGAATCCTGCTAAAGAGTCTGGCCTGGACCCTGAGAAGCCAGTGGACAGTTTTAAGCAGAGGAATAACATCACCACTGTATATTTCAGAAAGATCACTAGGGCAGCCGAGTGGAGGAAAGCTTGAAGAGGGGGTTAGAGAGAAGGCAGGTTGAGACTACTTAAGATATTGTTGAAATAATTGAAGAGAGAAATGACAGGAGCCTGCTCTAAGGCAGTAGAATGGTGGCTGGGAAGATGTGAAGGAAGATTTTCCCAGTCTGTGAAGTCAAGAATCACTTGCCGGCCGGGTGTGGTGGCTCACGCCTGTAATTCTAGCACTTTGGGAGACTGAAGCGGGTGGATCACCCGAGGTCAGGAGTTGAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAGTACAAAAATTAGCTGGATGTGGTGGTGGGCGCCTGTAATTCCAGCTACTCAGGAGTCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTACAGTGAGCCAAGATTGCACCACTGCTCTCCAGCCTGGGGAACAGAGCAAGACTGTCTCAAAAAAAAAAAAAAAAGGAAAAATAAAAAAGAATCACTTGCCGATTTTACATTTGTTCCTCCCCAAACCAAAGTTATACCTTGATGTAACCAGTGGGAGGAACTTGAGCTGCTTGGGTAAATAACCCAGAAGAAATGTGATGAGAGTAGGCCTGTGAGATAATTTTAGGAAGATCTGATGGCACAGCGTGGAAGAAAATCAGGTTTCCCTACAGAATCGCTCCCAAAAGAAAACTTATTTTGGTTAAATTTCTGGATTTAGGTAGAGCTGATATCAAACCCTCATTTGGTCTGTTTTATCAAGCTTGGACTGCAGCAGATGTGGAACTAGAGATTCGTCACAGATTCCAGTAACATTTAGGAAAATGTTTGGCTCTGCTATTCCAGTTCAGTAGAACAACTTCGAAACTGGATTTTTCTGTAGGGTGTCATCATCACCCTGAGATGCCAATGTCATCTGTGTTGTTATAGTCTTGGGTCTGCTTTGTGATCCAATGAGCCCAAAAGAGTAAAATGCCCTCAAAGGATTGAGAAAAAAAAAAGGAAAAAACAAAACAAAGGAAAACAAAACCTTCCCAATTGAGACTTTAGCAGCGTTGTTTAGTGTTCTAAAAAAAAAAGAAAGGCAATGAAACTAATGAGACCTGTAAAGAGAATATGAGAGAGTAGGGAGAGCAGGGTAGATGGAAGCTATTAAACATTTACTATGTGTCAGATGTTTTCATGGTGTAATATCATTTGTCTTGTAAAAGTCCTCTGTGGTGGGTTTTATCATTTTTATTATTTTATTTCATGAAGGACTGAACTGAGGCTCAGAGGTTAATAATGCCCCACAGGTCATGTAGTAAATTGTAGAGGCAGGATCCAAACTGATATCTTTTTGCCTCCAATGCTCGTGTTCTTTTCTAGTAACTCATGCCACCTTCCCATAGACAAGGTTATTTTGTTCCCAAGCTTACTTAACTTCCTCTGCATGTCGTAAAATCCTAAATTCCTAAATTCTCCCTGACCCCAAGTGAAAGATCCATTTGGATCAACATTTTTGTTACAGTGTTGTTTCTACTCTGTGTGCTCTCTTAAGTCCTGGAGCAATATGAGATTAATTGTTCTAGGTATAATAAACTCATGCAGTCAAATACTATCACTTCAGCTCACATATGTGAGGCAACTTGACCTTGAGTTCGAATTGACCAAGGCCACTCAAACCTATTTGAACTAAATGGGTCTGGCCAGGTACCCTTCATACTGACATTAGTTTTAGATAGTCTAAGGGTAACACATGCTTGAACAAACGTGATTTTATTTTAAATTGGAAATAAAATAACATCTAGTCAGATGACTGCTGTTTCAGGCTGGAATGATGTCTGACATCAATTTCTAGCAGCTGGAATCCATTCCCCAAGTGGCAAAGCGTACCTTGGCCTCTATAACCCTGAAGCTCAGCCAGTTTCTTAAGGTCTTCTAATAGAAAACAGCAAGATATTTCTTAAGGGTGGTTCAGAAAGCATAATTTGGAGTTGATTCTAATCCTAGCAGTGACCTATGTTAGGCAAATGCCTTGGATAGTGCTCAGTCCCCTATGACCTTCAGTCCTCTTTTTTTTTTTTTTCATAGCATAAACTATTGACCTTAACACGAAAGGAAAACTCCAGACATCACGTTGCTGAACTAGATAGCTCAGAGTCTTGAACAGTGTTGTTCATAGCCCAGTAAATAGGCTAGCCCTCTCAGAACTCTTTCTAGGTGATTTCTAATTTAAAATAAGCTTTAAAATTCATGGTATACTATTTGCTCTAGGCAAGTGGAAATGGGAATTAGTTATGGGTATAGAAGGGCACGGGTGTTCAAGGAGATCTAACTACAGCTTTTCTATGTTAACTTGTGTCTCATTCCTTGAAATAG
Seq C2 exon
ACCAGCCTCTCAGTGTAGATGAAGAGGGGCTGGTCTTACTGGAGCAGAAGCTTTCCCGAGCCAAGACCCAGATCAACAGCCAACTGCGGCCCATGATGTCAGAGCTGGAAGAGAGGGCACGTCAGCAGAGGGGCCACCTCCATTTGCTGGAGACAAGCATAGATGGGATTCTGGCTGATGTGAAGAACTTGGAGAACATTAGGGACAACCTGCCCCCAGGCTGCTACAATACCCAGGCTCTTGAGCAACAGTGAAGCTGCCATAAATATTTCTCAACTGAGGTTCTTGGGATACAGATCTCAGGGCTCGGGAGCCATGTCATGTGAGTGGGTGGGATGGGGACATTTGAACATGTTTAATGGGTATGCTCAGGTCAACTGACCTGACCCCATTCCTGATCCCATGGCCAGGTGGTTGTCTTATTGCACCATACTCCTTGCTTCCTGATGCTGGGCAATGAGGCAGATAGCACTGGGTGTGAGAATGATCAAGGATCTGGACCCCAAAGAATAGACTGGATGGAAAGACAAACTGCACAGGCAGATGTTTGCCTCATAATAGTCGTAAGTGGAGTCCTGGAATTTGGACAAGTGCTGTTGGGATATAGTCAACTTATTCTTTGAGTAATGTGACTAAAGGAAAAAACTTTGACTTTGCCCAGGCATGAAATTCTTCCTAATGTCAGAACAGAGTGCAACCCAGTCACACTGTGGCCAGTAAAATACTATTGCCTCATATTGTCCTCTGCAAGCTTCTTGCTGATCAGAGTTCCTCCTACTTACAACCCAGGGTGTGAACATGTTCTCCATTTTCAAGCTGGAAGAAGTGAGCAGTGTTGGAGTGAGGACCTGTAAGGCAGGCCCATTCAGAGCTATGGTGCTTGCTGGTGCCTGCCACCTTCAAGTTCTGGACCTGGGCATGACATCCTTTCTTTTAATGATGCCATGGCAACTTAGAGATTGCATTTTTATTAAAGCATTTCCTACCAGCAAAGCAAATGTTGGGAAAGTATTTACTTTTTCGGTTTCAAAGTGATAGAAAAGTGTGGCTTGGGCATTGAAAGAGGTAAAATTCTCTAGATTTATTAGTCCTAATTCAATCCTACTTTTCGAACACCAAAAATGATGCGCATCAATGTATTTTATCTTATTTTCTCAATCTCCTCTCTCTTTCCTCCACCCATAATAAGAGAATGTTCCTACTCACACTTCAGCTGGGTCACATCCATCCCTCCATTCATCCTTCCATCCATCTTTCCATCCATTACCTCCATCCATCCTTCCAACATATATTTATTGAGTACCTACTGTGTGCCAGGGGCTGGTGGGACAGTGGTGACATAGTCTCTGCCCTCATAGAGTTGATTGTCTAGTGAGGAAGACAAGCATTTTTAAAAAATAAATTTAAACTTACAAACTTTGTTTGTCACAAGTGGTGTTTATTGCAATAACCGCTTGGTTTGCAACCTCTTTGCTCAACAGAACATATGTTGCAAGACCCTCCCATGGGGGCACTTGAGTTTTGGCAAGGCTGACAGAGCTCTGGGTTGTGCACATTTCTTTGCATTCCAGCTGTCACTCTGTGCCTTTCTACAACTGATTGCAACAGACTGTTGAGTTATGATAACACCAGTGGGAATTGCTGGAGGAACCAGAGGCACTTCCACCTTGGCTGGGAAGACTATGGTGCTGCCTTGCTTCTGTATTTCCTTGGATTTTCCTGAAAGTGTTTTTAAATAAAGAACAATTGTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000058085:ENST00000264144:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains