RnoINT0084200 @ rn6
Intron Retention
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70566643-70571206:-
Coord C1 exon
chr13:70571107-70571206
Coord A exon
chr13:70568174-70571106
Coord C2 exon
chr13:70566643-70568173
Length
2933 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
3' ss Seq
TCTCTTGTTCCCTAAAACAGACC
3' ss Score
7.76
Exon sequences
Seq C1 exon
GTGATTACTGAAGCCCAGCAAGCTGATGCCAGAGCCAAGAGCACGGGAGTTACGATCCAAGACACGCTCAACACATTGGAAGGCATCCTGCGCCTAATAG
Seq A exon
GTCTGTGGAGCAGCCACAGCGTTCCAGCCCCGGGACTGTCCCCAGAGGACTCGATATTCTTAGTCGGGATGGATGGGGATCTCAACTTTCCTTGAGACCATCTGGAAATCTGCTTTGTCTCAGGGCCCAGACACTTGGGCCAGGTTGCAATACATTTTCTCTGTTTTACCATCTCTAAGATGAGTCACGGAACAGTTGTAATCTGGAAGTGAAGATCTGTGAGTCAGAGCACTGGGTGTGTTCCAGGAAATTCCCAGAAGCTTGGTCAGCTTGAGGGTCTTGCCGAGGAGTCTGGTCTTGAGTCTGAGGGAGCCCCTGGGCAGTTTTAAGGAGGAGAGTAACCGCATCACTGCACTAGAGAGGAGAAGTTGAGGGGGGCTTAGAGGCAAAGAAGGCCATGTGGGAACTGTTGAAAGCAGACTGGAGCCAGTTATGAGGCAGGAGAAGTGGGGAGGGAAAGGCGAGGAGCCATGGGCTGCCTTAGTCCAAAGGACCATCTGCTGAATTTGACAAATTCCTCCCTAAACCAACCTATACCTATTACGACCAACTGGGAAAAGAGGATCCTCTTGGATAAATAACCTGGAGGAAATGTGCTAAGAGCAGGAGATACTGTGGATTTGGGGATAGAAGAGATTTCCTAACACAGTATGACAGGGAGTCGGTTTCCCCATAGTTGTTACCCAAAGAAAACTGATGCTAATTAAAGGGCTAAATCTGGGGGCTGCAGAGATGGCTCCCTGTCCAGCGACATTTGTTTTTTCTTCAAGAGGATCCCTTTTTTGTTCCCAGGACTCATGTCGGGCATCTGTAACTCTACTACAGGGGCATCTGATAGCTATCCTCCCTGGCTTCCACGGGCACCCATGTACATGTAGAACATGAACACACATACACGCTTGCGAGTACACACACATACACACACACACACACACACACACACACACACACACGCATGCACGCATGCGTGCATATGCACATATAAATACTTGTTTAAAACATTGAAATCTAAGTAGTTAATAGGGTTCCCTCATCAACGGAGACTGCAGTGGATAGGAACTAGGAACTGGGTCACGTATTCCCATGACATCCAGGAGAAGCCTTAGCTGTGTCTCACCGGTTCAGTAGAACAATTCCAATACCTGATTGCCCTGTGGAAGAGGATTATTGTCACACTGACAGGCCAGTATTGTCTGTGCTGTTGCACTAATGGGTCTGTTTGTGATCCCGTAAGACCCGGAGAGTAAAATGCCCTCTAAAGATTAAAGATACGATCTCCCCAGTTGAGATTTTAGCAGTGGCTTAGCATTCTAAAAACCCGGTAATGAAATCAATGGAGCCTTTAAAGGGAACATGAGTGGGAGGGAGGGGAGTGGGGAGTGCTAACCATTTACTACCTGTCAGGTACTGTGCCAGAGTTCTCGGGGCATGGCCATTTAAGTCTCGTTAGCATTCTGGGAGATGGATTTTATTATTGTCCTTCAATAATAAAAGCGTGGGGGATAAACCGAGTATGCACAGTAAACTGTGGGACAGGGTTTACACTAAGATCTGTATCTCCATGTTCCTGTCCTGTTCTTTTCCTGAATGTGGCTTCCCATACATGTTAGCTCACTCCCGAGCTTACTAATTTGTTGTGCTGTCACAGAACCCCTAATTCTGGAAGTTTTCCGGAAGGGTCCACTGGGGTCAATATTTTCACTGTGGTATATATAATTTCTACTTTAGGCAGTCTCTTGAGTTTGGGGATAATAACTCATTAAGTACTATTAGCACAATAAGTTCATGCATTGAAATCCTAGCACTGACACACACAGACACAGACACACACATACACACTCACACATACACACACATAGACACACACACAGACACACACAGACACACACATACACACACACAGACACACACACACAGACACACACACACAGACACAGATACACACACAGACACACACACAGACATACACACACAGATACACACACAGACACACACACAGACACACACACACAGACACAGATACACACACAGACACACACACAGACATACACACACAGATACACACACAGACACACACACAGACACACACACAGACACACAGACATACACATATACACACACACAGACACACACAGACACACACATCCACAGACACACAACACACACACACAATACACACACAAATGTAATAAGATAATTAGGAGGAAACAAATCCTGTCACTGAGGCTCAGATTCCATGGAGCAGCCTGACCTTGAGTGCGAACTCACTGGGAGCTGCTTAAATCTACTTGAACCAAATCTATATGGCCAGGTTCTCTCATGTTGACATCGGCTTTATATAGTATGCAGGTAGAATATACCTGAACAAATGCCATTAAACGAAAAGACACCTAGCCAGGTTCCTACTGTTTCAAGCCAGAATGAAGTCTTGCACCTTTCCCTAGCAGCTGAAATCCATCCTCCAAAGAGTTAACCCTGGCCTCTGTAAACCCTGTGGTTCAGCCCATGTCTAAAGGCCTCCTACTATAAGACAGCAAGATACTTCCTCAGGTGAACCAGAAAGTCTGTTTGGAGTTAGCTTAGATCCCAGGGGTGAGCTGTGTTAGACAGTGACCTCAGACAGTGCCCAGCTCCTTATAACCTTCGGCCTTCTCAGATCACGATCCGAGTTATTTCAACCAGATAGAACTCCGAACCTCATTGGCTACACGATGGAGCTCAGTCTTGAACTCGGCCGTTCATAGCCCAGATGCATGCCTTGTGTTCTCAGGGAGATTTCTACTTTATTCTTAATTTAAAGTGAGGCCATCTCAGTGCGTGGCAAGCCGTTTTCTCTTGGCAGAATGTGTTAGGATCTCAGGAGGGTTGTGTGCGTTCCTCGAGGTCTCTCTACAGCTTTTCTCTGTTAACACCTCTCTTGTTCCCTAAAACAG
Seq C2 exon
ACCAGCCTGATGCTGTGGATGAAGAGGGGCTGATGCTGTTAGAACAAGAGCTTTTCCAAGCCAAGACCCAGATCAACAGTCGACTTCGGCCCTTGATGTCTGAACTGGAGGACAGGGCGCGTCGACAGAGCAACCACCTCCACCTGCTGGAGACCAGCATAGATGGGATTCTAGCCGATGTGAAGAACCTGGAGAACATTCGAGACAACCTGCCCCCAGGCTGCTACAACACCCAAGCTCTTGAGCAGCAGTGAAGTCGCCATAGAGATTTGTCCATTGTGGTGAGGGACACAGCCCTCAGGGGTCGGGAGCCATCTCAGGTGGATGGGCTGGGCTCAGGATATTTGAACGTGTTTAATGGGTTTGTTCAGGTCTATGGGACCTGACTCCACCCCTGAGACCATGATGGATGTCCTCCTGTACTGATATAATCCTGTTTGCCCCCTGACGCTTGGCTGTGAGGCAGATAGCGTTGAGTATGAGAATGATCAGAGACCAACAAATGCTGAGCTCAGAACAGTCGTAAACTGAATTCTGGGATATAGAAAGTCCTGCTGCTATGTCAGGGCAAGAAATCTAATCCCACTGTGGCCAGTATTCTTGCTTCCCCCACTATATGTTTTTGTTGACCAGATTTCTTCCACCGCCCACCCAATACATGAGTATGTCCTTTACTGCATAGTGAGACAGTAGTAATGGGTGTAGACCTGGAAATCTGGCCCACTCGGAGCAATGGTGCCCACTGCCACCCCTCACCTTCATGCTCTCCACCTGAGAGTGACAGCCTTTCTCCTAATGGTGCCAGAACAACTTGGAGACTGTGTCCTTATGAAAGCATTTTTTTTTTTTTTTACCAGCCAAGGAATCCCTGGGAAAGTATTTCCTTTGAGTTTCAAAGCAATAAAAGAAAATATGTCTTGGGCACTACAGGAAGTAGAATTATATCAATCTTAATCCAGTCTTCCTTTGGGAATGCTGAAACTCATATACGTCTGTGTATTGTGTCTTATTTTCTCCCTCTCTCCCTAAATCATGGATAATCCATCCTTCTAACATATATTTATTGAGTCACTACTAGGTGCCAGGGGCGAGTGGAACAGTATGGACATTCTCTACCCTCATGGAGTTGAGTGTCTAGTGAGAAGGGCAAATGTTAGAATAAATAAATGGAAACTCCCAAGCCTTGTTCATCTCATGTCATATTTATTGCAGTCACCCACCCTTTGGTTTGAAACCTCTTTTCTCAATAGAACATGTGTTGCAAGACAGTCCCATGAGGGTACTTGAGTTAGGGCAAAGTTGAAAATTGCTCTGAATTGGACACATTTCTCTGCGTTCCTGCCCTGCCTCCACCCCTTCCTACGGTAGACTGTTGCCACAGACGGTTGCATCATGGGAATACCAGTGGGAATTGCTGGAGGAACGGAGGCATTTGTACCTCAGTTTGGAAGACCTGTACTAGCTCACTTTTGAATTTCCTTGTCTTTTCATGGATGTGTATTAAATAAAGAAGGAGTGTTAGATGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667:ENSRNOT00000036947:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]