HsaEX1021964 @ hg38
Exon Skipping
Gene
ENSG00000162761 | LMX1A
Description
LIM homeobox transcription factor 1 alpha [Source:HGNC Symbol;Acc:HGNC:6653]
Coordinates
chr1:165210699-165213813:-
Coord C1 exon
chr1:165213641-165213813
Coord A exon
chr1:165211236-165211337
Coord C2 exon
chr1:165210699-165210776
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTCAGAGTTGCCTACCTG
3' ss Score
-16.46
5' ss Seq
TACCTAGAG
5' ss Score
-19.26
Exon sequences
Seq C1 exon
GTAAAAGTGATGATGAAGAAAGTCTCTGCAAGTCAGCCCATGGGGCAGGGAAAGGAACTGCTGAGGAAGGCAAGGACCATAAGCGCCCCAAACGTCCGAGAACCATCTTGACAACTCAACAGAGGCGAGCATTCAAGGCCTCATTTGAAGTATCCTCCAAGCCCTGCAGGAAG
Seq A exon
CTGGCTCTGCCGGGTTCCAGATGGCTCTCATTTTATTCTCTTTGGGCAGGGCTCACTTGGGGTAGCAGTCACTATGGATATTCATGAAACACCCAAAGTTAC
Seq C2 exon
GTGAGAGAGACTCTGGCTGCAGAGACAGGGCTGAGTGTCCGTGTCGTCCAGGTGTGGTTCCAAAACCAGAGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162761_MULTIEX1-2/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=46.6)
A:
NO
C2:
PF0004624=Homeobox=FE(43.9=100)
Main Inclusion Isoform:
ENST00000294816fB18914
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGATGAAGAAAGTCTCTGCA
R:
TTCGCTCTCTGGTTTTGGAAC
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains