HsaEX6034611 @ hg38
Exon Skipping
Gene
ENSG00000162761 | LMX1A
Description
LIM homeobox transcription factor 1 alpha [Source:HGNC Symbol;Acc:HGNC:6653]
Coordinates
chr1:165207482-165213813:-
Coord C1 exon
chr1:165213641-165213813
Coord A exon
chr1:165210699-165210776
Coord C2 exon
chr1:165207482-165207832
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCGTTCAATTTTTCCAAGGTG
3' ss Score
6.62
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTAAAAGTGATGATGAAGAAAGTCTCTGCAAGTCAGCCCATGGGGCAGGGAAAGGAACTGCTGAGGAAGGCAAGGACCATAAGCGCCCCAAACGTCCGAGAACCATCTTGACAACTCAACAGAGGCGAGCATTCAAGGCCTCATTTGAAGTATCCTCCAAGCCCTGCAGGAAG
Seq A exon
GTGAGAGAGACTCTGGCTGCAGAGACAGGGCTGAGTGTCCGTGTCGTCCAGGTGTGGTTCCAAAACCAGAGAGCGAAG
Seq C2 exon
CTTATCCACAGCGTCCAGGCCTGGATCCCACCACAGCGTCAGGGACTGCTTGCAGAGTCACAGATACGTTCAGTTTCTCATCTTGCTTAGTTCTCCTTCCAGGCTAATTGATTTAATAGAAGACACCTCGGTGACTTGGCTCTTTCCAAAATAACATAAAGTAGTAAAAATAATGATAGTAAAATAACAATGCCTTCCTTTGTTGAACACTCTTATAGATTGGTGTTCTCATACATGCTGACTTGACTTTTACAACACCCATTCCTGGAGGCGAGTGGAGAAGTTGTTATTATCCCTATGTCACAGATGAGCAAACAAAGGCTCTGCAAGATTGAATGTGGCCCTAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162761_MULTIEX1-3/5=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.143 C2=NA
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=46.6)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
NA
Main Skipping Isoform:
ENST00000294816fB18914
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATCCTCCAAGCCCTGCA
R:
GAAAGAGCCAAGTCACCGAGG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains