HsaEX6034613 @ hg38
Exon Skipping
Gene
ENSG00000162761 | LMX1A
Description
LIM homeobox transcription factor 1 alpha [Source:HGNC Symbol;Acc:HGNC:6653]
Coordinates
chr1:165205864-165210776:-
Coord C1 exon
chr1:165210699-165210776
Coord A exon
chr1:165207482-165207832
Coord C2 exon
chr1:165205864-165206034
Length
351 bp
Sequences
Splice sites
3' ss Seq
TGATTGGGGATGGCACTGACCTT
3' ss Score
-22.03
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GTGAGAGAGACTCTGGCTGCAGAGACAGGGCTGAGTGTCCGTGTCGTCCAGGTGTGGTTCCAAAACCAGAGAGCGAAG
Seq A exon
CTTATCCACAGCGTCCAGGCCTGGATCCCACCACAGCGTCAGGGACTGCTTGCAGAGTCACAGATACGTTCAGTTTCTCATCTTGCTTAGTTCTCCTTCCAGGCTAATTGATTTAATAGAAGACACCTCGGTGACTTGGCTCTTTCCAAAATAACATAAAGTAGTAAAAATAATGATAGTAAAATAACAATGCCTTCCTTTGTTGAACACTCTTATAGATTGGTGTTCTCATACATGCTGACTTGACTTTTACAACACCCATTCCTGGAGGCGAGTGGAGAAGTTGTTATTATCCCTATGTCACAGATGAGCAAACAAAGGCTCTGCAAGATTGAATGTGGCCCTAGATCG
Seq C2 exon
CTCAGACAAACGGTGGTGGGAGTGCTGGGATGGAAGGAATCATGAACCCCTACACGGCTCTGCCCACCCCACAGCAGCTCCTGGCCATCGAGCAGAGTGTCTACAGCTCAGATCCCTTCCGACAGGGTCTCACCCCACCCCAGATGCCTGGAGACCACATGCACCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162761_MULTIEX1-5/5=3-C2
Average complexity
ME(4-5[97=99])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.707
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(43.9=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAGACTCTGGCTGCAG
R:
TAAGGGTGCATGTGGTCTCCA
Band lengths:
246-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains