HsaEX1027815 @ hg38
Exon Skipping
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr17:78419546-78424141:+
Coord C1 exon
chr17:78419546-78419725
Coord A exon
chr17:78420382-78420386
Coord C2 exon
chr17:78424061-78424141
Length
5 bp
Sequences
Splice sites
3' ss Seq
GGGGGTGGCTGCCATTAAAGGTG
3' ss Score
1.05
5' ss Seq
GGGGTCTTT
5' ss Score
-5.25
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGAGGTCAGGTGTGGTGTCCTCTGCCACCTTCGAGCAGCCGAGTCGCCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCACTGATCAAGAACTTCTTCTGAGGACAGACAGGTGCTGTCTCTAGCATCACCTCTCAGCACGATTTTCCCGAGAGTTCACAG
Seq A exon
GTGGG
Seq C2 exon
GAATGGCCTTGATGAAGATGACAGGCATGGCCGGGGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCAGTCTGGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGATTTTCCCGAGAGT
R:
GACTGGAGTCATCGCTGAAGC
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains