HsaINT1026729 @ hg38
Intron Retention
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr17:78419546-78424554:+
Coord C1 exon
chr17:78419546-78419675
Coord A exon
chr17:78419676-78424060
Coord C2 exon
chr17:78424061-78424554
Length
4385 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
GGTCTCCATGCGGTCCACAGGAA
3' ss Score
6.94
Exon sequences
Seq C1 exon
GAGCAAGAGCAGCTCTACCTGAGGTCAGGTGTGGTGTCCTCTGCCACCTTCGAGCAGCCGAGTCGCCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCACTGATCAAGAACTTCTTCTGAGGACAGACAG
Seq A exon
GTGCTGTCTCTAGCATCACCTCTCAGCACGATTTTCCCGAGAGTTCACAGGTGGGGCAGGTGGTTGTTCTGACTCAACCAGAGCTTCCAGAGGGCTCTTTGATCCCTTTCTCAGTTAAACACAGAGCAGCATCTTCAGGGGTATGGCAGCTGTCCTCAAAGTTAGAAGCTGGATGCTAAATTAGGCAGTCTGTTCACTTTCCATCTGGTACCCACTCCACTAAGTCCCAAGGCGCCTGTGCTGGGGTCGGCAGTGGCAGCCTGTAGTCCCCTTCTGCTCTCCCTTCCCAGGGGGTCCTGAAGAAGCCCTGGGGCAAGGGCTCAGGGATGAGGGGGCAGAAAGGCAGATTGAGCCCCTCCAAGCTGAGCACACTGGTGCAGGAGATGTAGACGTGGGAGGAGGGGAGCACGTTTGCTCGTGAGAGTGGCTCTGGCTTGCTGCCCTGGCCGGCTGTAGTGCACAGGGTGGGGCGTCGGTAGAGCCAGACCGTGGGCTGCTGCCTGGACGCCTCGCTGACATCCCTGTGCTGCGGTTACAGAGCTGCGCCCTTCTAGACTCTGGAAGTTGAGTAACAGGACCTGCTCTGCCCACCCAGGAGGGGCCTGCCGCTTCACCAGAGGCACCAGTGGGGTCCCACAGTCACCTGAGGTACCCCTGGACTGTCTTGACGCCTAGAGGTCCGGGCAGGGGGTGGCTGCCATTAAAGGTGGGGTCTTTGCTGAGTGACCTTTTGTGTCCTGGATCCCTCAGGGCCTGGACTGCACTCCGGGTGGGGTCAGGCTCCCGAGGCCCCTGCTCTCTGGTTCTGGATGTTGTGGGTAGTTCTGTTGCTTTGGATGGCTGGGCCTTTGGATGGTGGCTTGTGGGGAAGGGACGGTGAGGAGTCAAAGATGAGCCAGGACCCATGTGGCCGGCACATGCGCTAGTGCCGGCATCTCATGTGTGCAGCGTGGGCTCCCTTAGTGCCTGGCACCTTAGTGCTCTGCTAAGTCTCATTGTTTAAAAATGTGTAGTTTATCTGCAGCTTTTCCTAGTTATTTTAATTACTTTTCATTTTATTTGAATAGTGTGTGCAAATGTAGAGAGTAAAACAATACTGCGGCCATTTCCTGCCCTCCCTTCCCCCAGGCAGCCACTCTTGGCTTGTTTCTTCTGATGTGCACACGTGTCCGTATTTCTAAATAACGTGCATATCCTGCTGTCTTCCCCCAAAATGTGTACTTAACCAAAACAGCACCAGTGTCACTCCTGAAACAAAAATTACCAAGAATGTCTTAGTATCATCAAATACCTAAATGGTGTTCACAATTCCACTTGCCTTAAAATTAATTTTTTCGATTATTTGACTTGAAGTCCAATTAAGGACTACACCTTGTGATTGTTTTTTCCCTAGCAATTTATTTTTTGAAGAATGAACTTTATTTTTATTGGATCTACTTAAAACATTTTTGTGTCACCTAGTAGCAGGGGATTTTGAATACATGTCATGTGTGTTTATAAAGCCAGCTCTCCATATCCCCCAGTGTCTCCAGGAGCTGCTTTTGTGACCTCACTGCCTGATCTCTTTATCATCTTCAGGTGCTTGACCCTTGCACAGAGAGAAGCTTCCTGGGCTACAGGGCATGGCAGCCTGTCCTTTCGGGGAGTGAGATTAGATTTAGTCCCTGCACTTTGCCTCTCTAGAAGCAGCTTCTCGCCTTTCCCTCCCGAGGGCTGGCAGGAGTCACTGTCACCCTTCATGGGGTCTGAAAGGTTGCATAGGCTCACCTGGTCTTAGACAAGGACAGTTGCAGCTTCCGCACCAGGCAGACCTGCAGTTTGAGTGGCTGGGGATAGGTGGAGCGGCGGCCTGGCCACAGTGCCCTGGACAGCAGCACATCACATCAGTTAACACTGTTTGCCTTCCAACTAGTTATTACGGTGTCCTGTGGGACAATTAGACTGGAGGAGCCAAAGGAATGTGCAGGGGCACTGGGTTTCTGTTTGGAGAGAGGCTCTCGGTAAACAGAGTTCGCATTCCTCCAGATTCTGTGGGACCAGAGTAAATATCATTATGCCACAGCCAGGCTTAAGCAATCTATCTGCAGTGCCGTTCCCGCAGCGCACACTGCTCCCTCTGTCTCTGCTGATGACCTTCGAGGCTGTCCTAGGCAGGTTCTCCCTGAGGAGCTCCCCACACCAAGCCTCCCTAACTCTGCAAAGCAGCCGGAGCAACAGAGAGCAGCGGGCGGCGGGCGGCGGCCGCCGCAGTCCTCCCGGCTTTCTAGGTGCGCGGGGCTGTCGTGTTCCAGTCCCTGTGTTCCCCGTCGCTGGAGTGCAGCTTAAGTGCGAATCATTTCTTGGAAAGTTTAGAGATAATTTTGTCAACTACCCACAATATGTATGTGTGGACTAGATTACTTTCTTATTTCAGGATCTAAAGGCAAAATGGAAAAACGTCACATTTTGTGGTTATTACCAGGGACTGAAGTGAGTTGCCCGGTGGCCCCTGGTGGCTTTAGCTCCCCTGGTCACCTGAAGGGCTGCAGTGACCCCTCCTGGCCAGCAGAGGTATTGGCCCAGCCAGGCTGGGGGAGGCTGAAACTGCTTCCCTTCTCTGCAGCCACAAAGGGCTGGATTCCTTGGGCGCCAGGAGGGGAGGATTTTTCTTTTCCCTCCGATAGCCCTACTGGGCGCTAAGATTGTTGTGAATCATTACCCTCAGAATTTGGACTTTCTAGATGCTTCTTAACCCATGATTTAGGTGAGTAAACTTGGAAAAATGTTTTTGCAAAACTTGATGATCAAGCTGAACGTAGAACGATATTCCTAATGGGTGTGTTTGCCTTTTTTCCCCCTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGAGTGGCATGATCATGCCTCGCTGCGTACTTGACCTCATGGGCTCAAGCGACCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGCACATACAACATTCCCAGCTAATTTTTTGTATTTTTGATTGATAGAGATGGTTTTGCCACGTTGCCCAGGCTGGTCTTAAACTCCTGGGCTCAAGTAAGATTGCCGTCCTGGGATTAGAGGCGTGAGCTGCTGCAGCGGCCTGCTTTTCTTTGAAGCCTGAGAAATGTTGAGGGCCGGGCACAGTGGTTGACACCTGTAATCCTGGCGCTTTGGGAGGCCGAGGTTGGTGAATCACCTGAGGTTAGAAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATAAAAAAATTAGCTGCGTGTGGTGGTGGGTGCCTGTAACCCCAGCTACTTGGGAGGTTGAGGCAGGAGAATCGCTTGAGCCCAGGAGGTGGAGGTTGCAACGTGAGCCGAGATTGCGTCATTGCACTCCAGCCTGGGCGACAAGAGTGAAACTCTCACTCTCCCTCGAAAAAAAAAAAAAATGTTGATCCTGTCTTGGTCCCCCTGGGATCCGTCTTTTCTGACGTTTGCCGCTGTCTCCCCTCATCCCCCAGGTTGCTAGTTAATTCTCTCCCCTCGTGCCTGCACCCTGCTGCCCTAGCTAGCCTGGCCACCTCACTGCCGTGTCCTGCATCAGCCCAGCCACAGAGTCCTACAGGTCCGGGGCTTGCTTGTGGGAACGGCTTGTTCTTCTAGACTCTGGGGGCGGGGGCTTGGGTGTGTTTCCTTACTTGTAAAAGGTCCTGTTGTTTTTGGGAGCAGGGAGTAATGGCGGATGAGACGCTGTGTGGAGGCGGCAGCTCCTGGTATGGGGTAACGCCCTGTCCCCTCATTGGCAGGTGGTTTGCATGAAGCATCAGGCCAGAGGGTGTGAGTGCCAAGCCCTCACCCCACATGCTGCTCCTGTTAAAAGCAAACTCCACTGACCCCCCCGGGAAGTCAGGATTTGGGATTTACTTCCTGGAATGCTTGCCTCTGGCTGCTGGGAATTGGGGCCTTTCCCCAAAGCCTGAACCAGGCCTCACAGTGGCCATCAGGCACAGAATGGATGGGCACAGCTGAGTGGCTCCACTGGCTTTAATCTGCCCCACCTCTTCCACACCAACCTCCACCCTCTGGTTCCGATGTGCTTGGTTACAAAGCACCTGATTATTTAAGAGAACGAAAAACCACCACCAGTTCCTGTAAAGAATAAGTCACAGGTGCACAGGTGAAGGGCTGAGTTGTGGTCCAGCCCCAGGGAGTGTGGGCTGTGAGGCAGGAGCGAGCTAAACCTGTAGGAGCAGCGCCACGGCTGCCAGGATCCACTTCGCTGCCTTCTCTTTGGTCTTCAAGTTAAAGGTCCAGACATAGGTGGGGCCGCGGATGCGTGTTTTGTACACGGGACACTCATAGATGTTCTTGGTCTCCATGCGGTCCACAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACAGGCATGGCCGGGGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCAGTCTGGGTGTCCCAGCGAGCCCCTGCAGGGACAGTATGGCTGAGGGTCAGGTGTGCTGCCAGTAAGTGAGGGAGGGGCTGGCAGGAAGGGTGGGGTCCTCACACTCCCCGCCCTCTGCAGAGCTGGGCTCTACCCCAAAAGGCTTCAGGCCAGCTGCCACGGCTGGAAGCAGAGGCCTTCGTAGGTGATGGCCTGCATGTTGTAACTACCCCGTCCCGCTGGGCTCAAGGAACAGCTCAGCTAAAGCCCTCGGGTTCCATCCGTTTAAATCTGTGGCATTTTCAGAGCCTCATCTGTCAGCCTTAATGTCAGTGGCAGGAAGTCATAACTCCAGCTAAAAATTACAGAGTAAAGTTCCCTGATTCTTAATGTGTAATGTCTGCCCTATGTGTACATACACAATATAATTATACATCTGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157:ENST00000262764:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=PD(2.9=12.5)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains