HsaEX1029300 @ hg38
Exon Skipping
Gene
ENSG00000279804 | PRAMEF18
Description
PRAME family member 18 [Source:HGNC Symbol;Acc:HGNC:30693]
Coordinates
chr1:13224842-13226048:-
Coord C1 exon
chr1:13225948-13226048
Coord A exon
chr1:13225215-13225433
Coord C2 exon
chr1:13224842-13225133
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTATGTTACTCACAGGAG
3' ss Score
7.55
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
ACCAGGCCTTGGCCATCTCCGTCCTGGATGAGCTGCCCAGGGAGCTCTTCCCCCCACTGTTCGTGGAGGCCTTCACTAGCAGACGCTGCGAGGTTCTGAAG
Seq A exon
GAGGTGGAAACTTCAAGTGCTGGAAATGCGGGATGTTGATGAGAATTTTTGGACCATATGGTCTGGAGCCAGGCTCCTGTCCTGCTCCCCAGAGGCCATGAGTAAGAGACAGACAGTGGAGGACTGTCCAAGGACAGGAGAGAAGCAGCCCTTGAAGGTGTTCATGGATGTTTGCCTCAAGGAAAAATTCATGGATGAAGATCTGAGCTTCTTCTCTGG
Seq C2 exon
AAACATATTGGAAACAGTATACCCAGACAGTATCCAAGTGTTGGAAATTTGGAACATGTGCTGGCTGTGTATGATAGTAGAGTTTAGCCGTTACCTGAGCCAGATGAGGAATCTTCGCAAACTCTTCATCTCTGATGGCTGTCGTTACCTGCTAAGCTCTGACAGCCAAGAACAGTTAGTTGCTGAATTCAGCTCTGTGCTCCTCAGGCTGGAGAACCTCCAGATGCTTTATGTAAGAAGGGTCTGCTTCTTCAGAGGCCACCTGGACCAGCTGATCAGGTGAGGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000279804-'0-1,'0-0,2-1
Average complexity
C2
Mappability confidence:
83%=50=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.010 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGGAGGCCTTCACTA
R:
GTGGCCTCTGAAGAAGCAGAC
Band lengths:
306-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains