HsaEX1029301 @ hg38
Exon Skipping
Gene
ENSG00000279804 | PRAMEF18
Description
PRAME family member 18 [Source:HGNC Symbol;Acc:HGNC:30693]
Coordinates
chr1:13222705-13225433:-
Coord C1 exon
chr1:13225215-13225433
Coord A exon
chr1:13224855-13224926
Coord C2 exon
chr1:13222705-13223905
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCAGCTCTGTGCTCCTCAGGCT
3' ss Score
7
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGGTGGAAACTTCAAGTGCTGGAAATGCGGGATGTTGATGAGAATTTTTGGACCATATGGTCTGGAGCCAGGCTCCTGTCCTGCTCCCCAGAGGCCATGAGTAAGAGACAGACAGTGGAGGACTGTCCAAGGACAGGAGAGAAGCAGCCCTTGAAGGTGTTCATGGATGTTTGCCTCAAGGAAAAATTCATGGATGAAGATCTGAGCTTCTTCTCTGG
Seq A exon
GCTGGAGAACCTCCAGATGCTTTATGTAAGAAGGGTCTGCTTCTTCAGAGGCCACCTGGACCAGCTGATCAG
Seq C2 exon
GTGCCTCAGGAGCCCGTTGGAGACATTGGCATTAACTTATGGCTTCCTAGAAGAAGAGGACTTGAAATGCCTGCCCCGGTACCCAAGTCTCAGTCAACTGAAGCAGCTGAATCTGAGTCATGGTGCACTGCGCTTCATCCGTCTTGAGCCCCTCCGAGCTCTGCTAGAGAAAGTTGCTGCCACTCTTCAGACCCTCTTCTTAGTGGACTGTGGGATTGGGTACTCCAAACTCAGGGTCATCCTGCCTGCCCTGAGCCGCTGCTCCAACCTCACCACTTTCTGTTTTCACGGCAATGACACGTCCATGGATGCTCTGAAGGACCTGCTGCGCCACACAGGCAGGCTGAGCAATTTGAGCCTGGAAACATATCCTGCCCCTCGGGAGAGTCTTGACAACAGGGGTCGTGTCATTTTGGAGCTCCTCACCCCACTTCAGGCTGAGCTGATGCGTATACTGAGGGAAGTAAGGGAGCCCAAAAGGATCTTCTTTGGTCCGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000279804-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGAGGCCATGAGTAAG
R:
AATGCCAATGTCTCCAACGGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains