HsaEX1029346 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90066861-90075023:-
Coord C1 exon
chr16:90074916-90075023
Coord A exon
chr16:90069978-90070052
Coord C2 exon
chr16:90066861-90066910
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTTTTTTCAGACA
3' ss Score
10.94
5' ss Seq
CAGGTTCCA
5' ss Score
-2.09
Exon sequences
Seq C1 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAGAATGGACACCTAGGCAGCAAG
Seq A exon
ACAGAGTTTCGCTCTTGTCACCCCGGCTGGAGTGCAATGGCGTGATCTCAGCTCACTACCACCTCCCCATCCCAG
Seq C2 exon
TCAAACCTCCTTGGATGGCCTTCAGAGGAGAACAGAGTAAACACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.475 C2=0.706
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=FE(40.4=100)
A:
NO
C2:
PF0230512=Phage_F=PD(16.9=88.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAGCCACTCGACCAG
R:
TGGTGTTTACTCTGTTCTCCTCTG
Band lengths:
153-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains