HsaEX0049970 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90061921-90075023:-
Coord C1 exon
chr16:90074916-90075023
Coord A exon
chr16:90062401-90062502
Coord C2 exon
chr16:90061921-90062192
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTACTCTTCTCCAACCTAGAAC
3' ss Score
7
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAGAATGGACACCTAGGCAGCAAG
Seq A exon
AACTCAGGAGGAAGGAGACTGAAGGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCATACAAAGAGATCAGCGAGCCACAGGATGATGACTACCTCT
Seq C2 exon
ATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.700 C2=0.227
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=FE(40.4=100)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGGACACCTAGGCAGCA
R:
CTCATAGGGGCCAAAGTGCAG
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development