HsaEX0049969 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90062401-90066910:-
Coord C1 exon
chr16:90066861-90066910
Coord A exon
chr16:90063612-90063768
Coord C2 exon
chr16:90062401-90062502
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATGTGATTCTCACATTAAAGGGA
3' ss Score
4.2
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TCAAACCTCCTTGGATGGCCTTCAGAGGAGAACAGAGTAAACACCAGAAG
Seq A exon
GGAATGCCCAAGGCGTCATTCAATAATGAATCTAGTTTGAGAGAATTGTCAGGAACGCCAAATTTACTGAATACAAGTGACTCAGAGCAGGCTCAGAAACCAGTGTCCCCTCCTGGAGAAGCAAGTACCTCTGGACAGCACTCTAGACTAAAACTGG
Seq C2 exon
AACTCAGGAGGAAGGAGACTGAAGGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCATACAAAGAGATCAGCGAGCCACAGGATGATGACTACCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=1.000 C2=0.700
Domain overlap (PFAM):
C1:
PF0230512=Phage_F=PD(16.9=88.2)
A:
PF095145=SSXRD=PU(0.1=0.0)
C2:
PF095145=SSXRD=WD(100=94.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCCTTGGATGGCCTTCA
R:
AGGTAGTCATCATCCTGTGGCT
Band lengths:
147-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development