HsaEX1029347 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90061921-90075023:-
Coord C1 exon
chr16:90074916-90075023
Coord A exon
chr16:90066861-90066910
Coord C2 exon
chr16:90061921-90062192
Length
50 bp
Sequences
Splice sites
3' ss Seq
GATTTCTCATCACCTCTTAGTCA
3' ss Score
4.91
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAGAATGGACACCTAGGCAGCAAG
Seq A exon
TCAAACCTCCTTGGATGGCCTTCAGAGGAGAACAGAGTAAACACCAGAAG
Seq C2 exon
ATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX1-2/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.706 C2=0.227
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=FE(40.4=100)
A:
PF0230512=Phage_F=PD(16.9=88.2)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCAGGCCATCAAACTCC
R:
CAAATGTAGGGGGCCCATGAG
Band lengths:
135-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains