HsaEX0049970 @ hg19
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR domain containing 7 [Source:HGNC Symbol;Acc:9351]
Coordinates
chr16:90128329-90130176:-
Coord C1 exon
chr16:90130020-90130176
Coord A exon
chr16:90128809-90128910
Coord C2 exon
chr16:90128329-90128600
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTACTCTTCTCCAACCTAGAAC
3' ss Score
7
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGAATGCCCAAGGCGTCATTCAATAATGAATCTAGTTTGAGAGAATTGTCAGGAACGCCAAATTTACTGAATACAAGTGACTCAGAGCAGGCTCAGAAACCAGTGTCCCCTCCTGGAGAAGCAAGTACCTCTGGACAGCACTCTAGACTAAAACTGG
Seq A exon
AACTCAGGAGGAAGGAGACTGAAGGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCATACAAAGAGATCAGCGAGCCACAGGATGATGACTACCTCT
Seq C2 exon
ATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.193
Domain overlap (PFAM):
C1:
PF0230512=Phage_F=PD(3.2=5.7),PF095145=SSXRD=PU(0.1=0.0)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
PF0085623=SET=PU(18.2=15.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGGCTCAGAAACCAG
R:
GTTCCATACTCCAAGCCCAGC
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)