HsaEX1029350 @ hg38
Exon Skipping
Gene
ENSG00000164256 | PRDM9
Description
PR/SET domain 9 [Source:HGNC Symbol;Acc:HGNC:13994]
Coordinates
chr5:23493471-23510027:+
Coord C1 exon
chr5:23493471-23493615
Coord A exon
chr5:23509470-23509593
Coord C2 exon
chr5:23509920-23510027
Length
124 bp
Sequences
Splice sites
3' ss Seq
GAATCTGTTACTTCCTCTAGGTC
3' ss Score
8.95
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
AGACAGTGTCTGCTGCTCTGTTGCCAGAGCTGGATCACATTGGCACCATCACGGCTCACTGCAGCCTCGACCTCTGGGCTCAAGTGAATCTCCCGCTGCAGCCTCCCGAATAGCTGAAACTACAGACACATGCCACCATACCCAG
Seq A exon
GTCAAAGATGCCTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGGCAGAGATGGGAGACTGGGAGAAAACTCGCTATAGGAATGTGAAAAGGAACTATAATGCACTGATTACTATAG
Seq C2 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCTGATGAAGAATGGACCCCTAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164256_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.000 C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9),PF0230512=Phage_F=PU(50.7=88.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=PD(47.9=94.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTCTGCTGCTCTGTTG
R:
TGCCTAGGGGTCCATTCTTCA
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains