MmuEX0037001 @ mm10
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15562415-15563331:-
Coord C1 exon
chr17:15563221-15563331
Coord A exon
chr17:15562814-15562937
Coord C2 exon
chr17:15562415-15562522
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTTTTCCCCCAGGTC
3' ss Score
13.02
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GACCATAGGACCCTGGACCTCTCCAGTGAAATGTCCTGCACCATGAACACCAACAAGCTGGAAGAAAATAGTCCTGAAGAAGATACAGGGAAATTCGAGTGGAAACCCAAG
Seq A exon
GTCAAAGATGAATTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCAATAG
Seq C2 exon
GTCTCAGAGCCCCTAGACCAGCTTTCATGTGTTACCAAAGGCAAGCAATGAAACCCCAAATAAATGACAGTGAGGATTCTGATGAAGAGTGGACACCTAAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=0.000 C2=0.541
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATAGGACCCTGGACCTC
R:
TTGTTGCTTAGGTGTCCACTCT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types