RnoEX6001059 @ rn6
Exon Skipping
Gene
ENSRNOG00000021493 | Prdm9
Description
PR/SET domain 9 [Source:RGD Symbol;Acc:1305247]
Coordinates
chr1:57553108-57554072:-
Coord C1 exon
chr1:57553962-57554072
Coord A exon
chr1:57553542-57553665
Coord C2 exon
chr1:57553108-57553215
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATTTTTTCCTCCAGGTC
3' ss Score
12.54
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GACCATAGGACCCTGATCTTCTCCAGGGAAATGTCCCGCACCATGAACACCAACAAGCCGGAAGAGAATAGTACTGAAGGAGATGCAGGGAAACTCGAGTGGAAACCCAAG
Seq A exon
GTCAAAGATGAGTTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCTATAG
Seq C2 exon
GTCTCAGAGCCCCTAGACCAGCTTTCATGTGTTACCAAAGGCAGGCAATCAAGCCCCAGATAAATGACAATGAGGATTCTGATGAGGAATGGACACCAAAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021493-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.000 C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATAGGACCCTGATCTTCTCC
R:
CTTGCTGCTTTGGTGTCCATT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]