HsaEX1029717 @ hg38
Exon Skipping
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46750709-46754648:-
Coord C1 exon
chr3:46754488-46754648
Coord A exon
chr3:46753208-46753921
Coord C2 exon
chr3:46750709-46751290
Length
714 bp
Sequences
Splice sites
3' ss Seq
GACTGTCTTTCTTTTTCCAGGGA
3' ss Score
11.21
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
Seq A exon
GGAGATTCTGGGGGGCCCCTGGTCTGTGAATTAAATGGCACATGGGTCCAGGTGGGGATTGTGAGCTGGGGCATTGGCTGCGGTCGCAAAGGATACCCTGGAGTTTACACAGAAGTTAGTTTCTACAAGAAATGGATTATTGATCACCTGAGACAAGCTTCCTGTTTGAATTCAAAGACTTCCTCATCCTAGTCCTGTGTCTGGTGATGCCCCTGGGCATCCTGGTGACCTCGTGATCAGACCCCATTCCACTCTTCTGCTGTTTCTGAGTCTCACACTTAGGTGTCTCCTCTGACCAACTTCCCACTCCTTCTCAATGCCCTTTCCGCAAATCCCAGTTGGAATCCACGGGCCCTCTGGAGATCCGTACAATAGAGCATGGCAGGGAGACTGGGGCCTGGAAAGTGCCCCTGCCTGGTGCTCTGGTCTAGAGGGCCAGCTGCTCTGCCAGGTGGGCCACGGTGACTCGTCAATATCTGGAGGAACATCTATCAAAGAAGAGACATCATCAACGGTGAAGCAAGCGTTAGATGTGGTTCTGGTTTCAGGGCTCTCACCTGAGACTTTGTGAAACCAGCCAGCTGGGTGATTGCTCACAGAGAGTGAAGGAGGCGTTACCAGGTCCCTGCAGACGTGTGAGGCCTGGGACTTCCACTCTGGCTCAGTTGTCTGGGGCTGGGAGAAGTTCCCCTGCAGCCCAGTGTGGATCCATCT
Seq C2 exon
ATTCTCAAACCAAGAGTAATTGTGAAACTCTCCAGTGCGCTGGGACCAGGGAACCAAGGGTGTAGTCAGAGGCTGGGCAACAGGATGCCATTAGTAGTCCAGGGATGCGGTGCACCTTCATCGGCCAGGTTCTCTGGGCATTGTCACCAACTTAAAACCCTTGGGGGTGCTTTCATGGGGCCCGCCACCCTGGGAGCAATCACAGACTCAGGACTCCCAGGTCGTCCTCAAGAACAGGCAGGAGATAGAGGTGAGGGAAATGCGCCAGTTTTGCGGGGAGCTGTCGGGAGTTCCCGGCGCCATCACGTGCTACAGTGCGGTCACGTGTGCAGACGCCAGGCACATGCCGGGCTCTCGGGAACCGTCTCCGCAGCCGCCAGGTGGCACCTCCCCAGCCTCATGGCCGTCTCACGGTCGAGCCTCGATCCCCCAGCCTCATGGCCTTATGATGGCCCCCAGCCTCATGGCCTCGACCCTCCAGCCTCATGGCCGGGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549-'10-8,'10-7,11-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACCAAGGGAAGGATGCC
R:
CACACGTGACCGCACTGTAG
Band lengths:
356-1070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains