HsaEX1029716 @ hg38
Exon Skipping
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46719944-46754648:-
Coord C1 exon
chr3:46754488-46754648
Coord A exon
chr3:46748625-46748651
Coord C2 exon
chr3:46719944-46720003
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTTTTCTCCTCCAGGTT
3' ss Score
12.84
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
Seq A exon
GTTATAAAGAGGACACAACCAATCCAG
Seq C2 exon
GTTGACTCTGGAAGCTCCCTTGTCTGCCAAATGGACAAGACCTGGATTCAGATAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549-'10-11,'10-9,17-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTAAAATGGTCACGAGGGG
R:
TCCAGGTCTTGTCCATTTGGC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains