HsaINT1028237 @ hg38
Intron Retention
Gene
ENSG00000261603 | PRSS46
Description
protease, serine 46 [Source:HGNC Symbol;Acc:HGNC:37325]
Coordinates
chr3:46733636-46734242:-
Coord C1 exon
chr3:46734065-46734242
Coord A exon
chr3:46733896-46734064
Coord C2 exon
chr3:46733636-46733895
Length
169 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TCCTACCCATGGTCCTGCAGATT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GGCCCTGGCTCCGGGCCTGCGGTCAGACCAACGTGTCCTGCAGGGTGGTGAAGGGGAAGCTGGTAGAGGTAGGCAAGTGGCCATGGCAGGTGAGCATCCTTTTCCTGGGCACGTACATCTGCAGTGGCTCCCTCATCCACCACCAGTGGGTCCTCACGGCTGCGCACTGCTTGCAGAG
Seq A exon
GTCAGTCAGCGGGGGCTGGGGACTTTGCTTTCTGGCCTGGGGAGTCCCTGGTGAATCTAGGGATCTGGGAGCAGGGGGCCTGGCTGGGTGGTCCTGAGCTCAGGGCCTGTCTCCTCCTTTACTTATGGCCTTACCATTGGCGACCTGCCTCCTACCCATGGTCCTGCAG
Seq C2 exon
ATTCAAGGACCTCAGCCTGTACTCCGTGATGGTGGGAGTCCACCAGCGCCCAGAAAATAGCACTCAGCTCCCGCTCACTCGCATGGTGATTCATAAGGATTTCAGCAATCTCATGTCTCAGGACATTGCCCTCCTAAAGCTCAGGGACTCCATCTCGTGGTCCCCCTTCGTCCAGCCTGTCTGCCTCCCTAACATCAAATTCAAGCCATCCATTGGAAGCATGTGCTGGGTAATCGGCTGGGGAACTACAGGGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261603:ENST00000463091:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(33.3=73.3)
A:
NA
C2:
PF0008921=Trypsin=FE(65.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCAGGTGAGCATCCTTT
R:
CGAGATGGAGTCCCTGAGCTT
Band lengths:
254-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains