HsaEX1029713 @ hg38
Exon Skipping
Gene
ENSG00000261603 | PRSS46
Description
protease, serine 46 [Source:HGNC Symbol;Acc:HGNC:37325]
Coordinates
chr3:46719583-46736429:-
Coord C1 exon
chr3:46736307-46736429
Coord A exon
chr3:46734065-46734242
Coord C2 exon
chr3:46719583-46720003
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTGAGATCCTCTTTCCTCAGGGC
3' ss Score
7.54
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATCCGTTAGAAGGAGCATTGAGGAGTAGATACCCACTTGCCATGGCCTGTGGGCCGGGGGATCTTCAAAGCCTTACATCTCCGCTTTCCTCTGCCAGATTAGATTATCAGCCGTCTATTGAAG
Seq A exon
GGCCCTGGCTCCGGGCCTGCGGTCAGACCAACGTGTCCTGCAGGGTGGTGAAGGGGAAGCTGGTAGAGGTAGGCAAGTGGCCATGGCAGGTGAGCATCCTTTTCCTGGGCACGTACATCTGCAGTGGCTCCCTCATCCACCACCAGTGGGTCCTCACGGCTGCGCACTGCTTGCAGAG
Seq C2 exon
GTTGACTCTGGAAGCTCCCTTGTCTGCCAAATGGACAAGACCTGGATTCAGATAGGAGTGGTAAGCTGGAGCTTTAGTTGTGGCCAGCGCCACTTCCCAGGTATCTACACCAGCACTGCCCACTTCAACCAGTGGATCAGGACTGAGGTTGCTAACATAAGGTTCATCAGTAGGGCTGGCCCTGCCTTCCTGAGCCCAGTTTTCCTCACTGGCTACATTCTACTGGGCTCCTTGAGCTCCCTGTGGCTCCTGTGAGCGGTGTTTCAAGGACAGTCCCTCCCAGAGGCTGCTTCTCCCTCCCCTCTGTTCTACCCTCAGAAGTGGAGACGAGAGGTTGCCCAGGATGGCAGGGCAGAGTGAGGGGGAGGGTCCGAGAGCCACTGTTACTTTCTGTTGTTCAATGAAGATGCTTTTGAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261603_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(33.3=73.3)
C2:
PF0008921=Trypsin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCTTTCCTCTGCCAGATT
R:
TGAGGAAAACTGGGCTCAGGA
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains