RnoEX0070370 @ rn6
Exon Skipping
Gene
ENSRNOG00000020981 | Prss46
Description
protease, serine, 46 [Source:RGD Symbol;Acc:1302970]
Coordinates
chr8:119121669-119126927:+
Coord C1 exon
chr8:119121669-119121800
Coord A exon
chr8:119126274-119126451
Coord C2 exon
chr8:119126665-119126927
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTTTCTCCTCAGGGC
3' ss Score
12.63
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GACGCTCCATCTTGTTCTAAAGACCAGTAAGGGCTGGACTCCTTGCCATGGCGTGTGGATCAGTGGATCCTCAGGGCCTTCTTTCACCTCCACTTTCTTCGGCCAGACTCAGTAATGTGCCCCATGTGGAAG
Seq A exon
GGCCCTGGTTCTGGTCCTGTGGTCAGACCAACATATCCTGCAAGGTGGTCAACGGGAAGGTGGTGGAGGTGGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGGTCCTCACAGCCGCACACTGCTTACAAAG
Seq C2 exon
ATCTAAGAACCCGGCTAACTACACCGTGAAGGTGGGAGTCCAGACCCTCCCAGACAACAGCTCCTCAGAGCTCCTGGTCACTAGCATCGTGATTCACGAGAACTTCATCAATCACATGTCCCATGACATCGCCATCCTGAAGCTCAAGTATCCTGTCACCTGGTCCCCCTTCATCCAGCCAATCTGTCTCCCCGAAGTCAATTTCAAGCCAAGCATTGGCACCATGTGCTGGGTCATCGGCTGGGGACTCGAAAAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020981-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.9=73.3)
C2:
PF0008921=Trypsin=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTCAGGGCCTTCTTT
R:
CAGATTGGCTGGATGAAGGGG
Band lengths:
255-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]