MmuEX6069413 @ mm9
Exon Skipping
Gene
ENSMUSG00000049719 | Prss46
Description
protease, serine, 46 [Source:MGI Symbol;Acc:MGI:1921556]
Coordinates
chr9:110747010-110752762:+
Coord C1 exon
chr9:110747010-110747138
Coord A exon
chr9:110752131-110752308
Coord C2 exon
chr9:110752500-110752762
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCACTCTCCCCTCAGGTC
3' ss Score
13.26
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
ACTCCATCTTGTTCTGAGGAGCAGTAAGGGCTGGACTCTGTGCCATGGCGTGTGGATCAGTGGATCCTCACGGTCTTCTCTCCTCTCCACTTGCTTCTGCCAGACTTAATAGTCTGCCCTATATGGAAG
Seq A exon
GTCCCTGGATCTGGTCCTGTGGTCAGACCAACATAACCTGCAAGGTGGTAAATGGGAAGGCGGTGGAAGTAGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGATCCTCACCGCTGCACACTGCTTACAAAG
Seq C2 exon
ATCCAAGAACCCGGCTAAATACACTGTGAAGGTGGGAGTCCAGACCCTCCCAGACAACAGCACCTCTGAGCTCCTGGTCACTAGAATTGTAATTCACGAGAACTTCATCAATCGCATGTCTGACGACATCGCCATCCTGAAGCTCAAGTATCCTGTCACTTGGTCCCCCCTCGTCCAGCCAATCTGTCTCCCCTCATTCAATTTAAAGCCAAGCATTGGAACCATGTGCTGGGTCGTCGGGTGGGGACTTGAAAAGGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049719-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(10.4=95.7)
C2:
PF0008921=Trypsin=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTAAGGGCTGGACTCT
R:
CTTCAGGATGGCGATGTCGTC
Band lengths:
253-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: