BtaEX6095963 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038616 | PRSS46
Description
protease, serine, 46 [Source:HGNC Symbol;Acc:HGNC:37325]
Coordinates
chr22:53315513-53318295:+
Coord C1 exon
chr22:53315513-53315561
Coord A exon
chr22:53317681-53317858
Coord C2 exon
chr22:53318039-53318295
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTCTCTACCTTTTTCCTAAGGGT
3' ss Score
8.73
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
TGCCGTCCTGCTCTCTGCTGTCCTCAGGCGTCTGTGGCATCTGTGACTG
Seq A exon
GGTCCTGGTTCCGGGCTTGTGGTCAGACTAACATCTCCTGCAAGAATGTGAACGGAAAGCTAGTGGAGGTAGGCAAGTGGCCATGGCAGGTGAGCATCCTATTCCTGGGCATGAGCATCTGCAGTGGCTCCCTCATCCACCGCCAGTGGGTCCTTACAGCTGCACACTGCTTACAGAG
Seq C2 exon
ATCCAAGGACCCCTTGTCATACTCCGTGAAGATGGGAGTTCAGAGCCTCTTGGAAAATGGTACCGAACGTCAAGTTGCTCGCATCACGATTCATGAGGATTTCACTAACCTATCCCAGGATCTTGCCCTCCTGAAGCTCAGGGACTCTGTCTCCTGGTCCCCACTCATCCAGCCTGTCTGTCTACCTAACCCCAAACTCAAGCCATCTTTTGGATCCCTGTGCTGGATGATCGGGTGGGGAAAAGTGGATATTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038616-'1-1,'1-0,5-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.0=73.3)
C2:
PF0008921=Trypsin=FE(37.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTGGCATCTGTGACTG
R:
ATCATCCAGCACAGGGATCCA
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]