MmuINT0127524 @ mm10
Intron Retention
Gene
ENSMUSG00000049719 | Prss46
Description
protease, serine 46 [Source:MGI Symbol;Acc:MGI:1921556]
Coordinates
chr9:110849627-110850258:+
Coord C1 exon
chr9:110849627-110849804
Coord A exon
chr9:110849805-110849995
Coord C2 exon
chr9:110849996-110850258
Length
191 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
AATCTTCTCTGGGCCTGCAGATC
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTCCCTGGATCTGGTCCTGTGGTCAGACCAACATAACCTGCAAGGTGGTAAATGGGAAGGCGGTGGAAGTAGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGATCCTCACCGCTGCACACTGCTTACAAAG
Seq A exon
GTCAGCTCTGGGGCATCCGCATTTGAGGGCTTGGCTTTCAGGCCTTGGTGGGGGGTGGGGAGTGTGGATGGGTCTTGGTGAATCTGGGCATTTGGGAGTGGAGGACATTACCGGAGGGAGCCTATCACTCAGAACCTTATTGTCACTCATGCCCTTACTACTAGTGATCTGAATCTTCTCTGGGCCTGCAG
Seq C2 exon
ATCCAAGAACCCGGCTAAATACACTGTGAAGGTGGGAGTCCAGACCCTCCCAGACAACAGCACCTCTGAGCTCCTGGTCACTAGAATTGTAATTCACGAGAACTTCATCAATCGCATGTCTGACGACATCGCCATCCTGAAGCTCAAGTATCCTGTCACTTGGTCCCCCCTCGTCCAGCCAATCTGTCTCCCCTCATTCAATTTAAAGCCAAGCATTGGAACCATGTGCTGGGTCGTCGGGTGGGGACTTGAAAAGGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049719:ENSMUST00000176403:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.9=73.3)
A:
NA
C2:
PF0008921=Trypsin=FE(37.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGGTCCTGTGGTCAGA
R:
GAGCTCAGAGGTGCTGTTGTC
Band lengths:
245-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types