RnoINT0118780 @ rn6
Intron Retention
Gene
ENSRNOG00000020981 | Prss46
Description
protease, serine, 46 [Source:RGD Symbol;Acc:1302970]
Coordinates
chr8:119126274-119126927:+
Coord C1 exon
chr8:119126274-119126451
Coord A exon
chr8:119126452-119126664
Coord C2 exon
chr8:119126665-119126927
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCTCTTCTCTGGGCCTGCAGATC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGCCCTGGTTCTGGTCCTGTGGTCAGACCAACATATCCTGCAAGGTGGTCAACGGGAAGGTGGTGGAGGTGGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGGTCCTCACAGCCGCACACTGCTTACAAAG
Seq A exon
GTCAGCTCAGGGGCGTCTTCACCTGGGGGCTTGGCTTTCAGGCCTTGGGGGGAGGGGGAGTTGTGGGGAGTGGGGATGGGTCTTGGTGAGCCTGGGGATTTGGGAGTGGAGGAAGTTACCTGTTCCCCGAGGTTGCCTATCACTCAGAACCTTATCTCTCCAGTCACTCGTGGCCTTAACTGCTAGTGATCTGTCTCTTCTCTGGGCCTGCAG
Seq C2 exon
ATCTAAGAACCCGGCTAACTACACCGTGAAGGTGGGAGTCCAGACCCTCCCAGACAACAGCTCCTCAGAGCTCCTGGTCACTAGCATCGTGATTCACGAGAACTTCATCAATCACATGTCCCATGACATCGCCATCCTGAAGCTCAAGTATCCTGTCACCTGGTCCCCCTTCATCCAGCCAATCTGTCTCCCCGAAGTCAATTTCAAGCCAAGCATTGGCACCATGTGCTGGGTCATCGGCTGGGGACTCGAAAAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020981:ENSRNOT00000028479:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.9=73.3)
A:
NA
C2:
PF0008921=Trypsin=FE(37.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGCAGGTAAGCATTCTT
R:
CTTCGGGGAGACAGATTGGCT
Band lengths:
295-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]