MmuEX6069410 @ mm10
Exon Skipping
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110834588-110838568:+
Coord C1 exon
chr9:110834588-110834739
Coord A exon
chr9:110836066-110836092
Coord C2 exon
chr9:110838421-110838568
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCTTTTCTCCTCAGGTT
3' ss Score
12.69
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCACGCCGCAGCTATCTCTGCTGCCCTTAGGGACAATATTCATGTATGGCTACGTCATTGCGCGGCCTGGACGCTGGGCCTGGATCCTTGAGGCGCTGGATCCTAATCTGCTTTGCGGCGCTACTGTTGCTGCCTCCGCGGCCAAACTTAG
Seq A exon
GTTATAATGAGAACTACACCGAACCAG
Seq C2 exon
TTTGTGGCACACCCTGGTGGCCAGACAACTTGGAGGAGAGCCACCACTGGCCCTGGGAAGCGAGCCTTCAGATAGAAGATAAGCACGTGTGTGGAGGAGCCCTCATTGATCGAAGCTGGGTGGTGTCTGCGGCTCACTGCATCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(17.5=82.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATCTGCTTTGCGGCGCTA
R:
TATCTGAAGGCTCGCTTCCCA
Band lengths:
123-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types