RnoEX0070366 @ rn6
Exon Skipping
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119112678-119115882:+
Coord C1 exon
chr8:119112678-119112831
Coord A exon
chr8:119113802-119113828
Coord C2 exon
chr8:119115735-119115882
Length
27 bp
Sequences
Splice sites
3' ss Seq
CGTCCTCCTTTTCTCCTCAGGTT
3' ss Score
12.56
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACAGCACGCCGGCGCTATCGCTGCAGTCCACAGGGACACACTCATGGATGGCTACGTCACTGCGCCTCCTGGACGCTGGGCCTGGATCCTTGAGGCGCTGGATCCCAACCTGCTTTGCGGCGCTACTGTTGCTGCCTCCACGGCCAAACTTAG
Seq A exon
GTTATAATGAGGACCACGCTGAACCAG
Seq C2 exon
TTTGTGGCGCACCCTGGTGGTCTGACAGCTTGGAGGAGCGCCACCATTGGCCCTGGGAAGTGAGCCTTCAGATAGAAAATGAGCACGTGTGTGGAGGAGCCCTCATTGATCAGAGCTGGGTGGTGTCCGCAGCTCACTGCATCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.2=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTTGCTGCCTCCACG
R:
CCTCCACACACGTGCTCATTT
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]