BtaEX6095961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031447 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:HGNC:30717]
Coordinates
chr22:53296646-53301970:+
Coord C1 exon
chr22:53296646-53296811
Coord A exon
chr22:53298704-53298730
Coord C2 exon
chr22:53301823-53301970
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCGTTTCTCCTCCAGGTT
3' ss Score
12.38
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCGCGGCGTCCGGGGTTCACGCGCGCCGCCGCTGCTGCCGCTAGAGGCCGCCTCAGGGGCCTATGGCCGCCTCGCTGTCCCGCCTTAGCGCAGGGCTTGCAGCCTCGAGGCCGTTAGGCCTGAGCCGCAGCTTCCTGCTGCTGGTACTGCTGCTGCTGAACTCGG
Seq A exon
GTTACAAAGGAGACAGCACCAAACCAG
Seq C2 exon
CTTGTGGCCAACCTTGGTGGCCGAAGAATTTGGACCTGTCTCGCCATTGGCCCTGGGAAGTGAGCCTCCGAGTGGGAAATGAGCACGTGTGTGGAGGGGCCCTCATTGACCTCAAATGGGTGGTGACTGCTGCCCACTGCATCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031447-'0-4,'0-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(16.8=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTGCTGCTGCTGAACTC
R:
ACACGTGCTCATTTCCCACTC
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]