HsaINT1028244 @ hg38
Intron Retention
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46748625-46754648:-
Coord C1 exon
chr3:46754488-46754648
Coord A exon
chr3:46748652-46754487
Coord C2 exon
chr3:46748625-46748651
Length
5836 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTCCCTCTTTTCTCCTCCAGGTT
3' ss Score
12.84
Exon sequences
Seq C1 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
Seq A exon
GTCAGTTCATGGGCGTCTTGCTGCCTCAGCATTGCAATTGTCTCCTCAAAGCTTCCTCATTCCCAGCCAGTAGGGCCTGGGTTATCTCCTAGCCCCTCTGTTTACCCTTATTCATGGTAATGGGATGTGAGGACAAGCCACCAAGGCTCTCCTGGGCAGCCTACCTGATCCTTCAGGAGAGAGCAACTGACACAGCCTGGAGTGGGAGGAGGGGTGAATCAGGCAGGTCCCACCAACAATACATGCTCCATGTTTTGAGACCCTTCTGTGTGACAGGCAGTGTACTCAGGTTAGCACTTGACTCATTATTGTCTCAGAGTAGGCACGATTTCATTAGGTATATTCCGTTTTTTGGAACACGCCTTTTTAGTAGGTACATGATTTTGGTTTATTGGAAATTGTCAATTCTCAGATCTCATATTGACAGATACCTAAGGCTAGGAGGGTCTTAGGGGTTCCTGGGGAAGCCCCCTGAGTGCCTAGCTCTGTAGCGCATTGCAGTGCAATTAGCCTGCTCTGATGTGGATCCTATTTCTTTCCTACAGTGACTGTCTTTCTTTTTCCAGGGAGATTCTGGGGGGCCCCTGGTCTGTGAATTAAATGGCACATGGGTCCAGGTGGGGATTGTGAGCTGGGGCATTGGCTGCGGTCGCAAAGGATACCCTGGAGTTTACACAGAAGTTAGTTTCTACAAGAAATGGATTATTGATCACCTGAGACAAGCTTCCTGTTTGAATTCAAAGACTTCCTCATCCTAGTCCTGTGTCTGGTGATGCCCCTGGGCATCCTGGTGACCTCGTGATCAGACCCCATTCCACTCTTCTGCTGTTTCTGAGTCTCACACTTAGGTGTCTCCTCTGACCAACTTCCCACTCCTTCTCAATGCCCTTTCCGCAAATCCCAGTTGGAATCCACGGGCCCTCTGGAGATCCGTACAATAGAGCATGGCAGGGAGACTGGGGCCTGGAAAGTGCCCCTGCCTGGTGCTCTGGTCTAGAGGGCCAGCTGCTCTGCCAGGTGGGCCACGGTGACTCGTCAATATCTGGAGGAACATCTATCAAAGAAGAGACATCATCAACGGTGAAGCAAGCGTTAGATGTGGTTCTGGTTTCAGGGCTCTCACCTGAGACTTTGTGAAACCAGCCAGCTGGGTGATTGCTCACAGAGAGTGAAGGAGGCGTTACCAGGTCCCTGCAGACGTGTGAGGCCTGGGACTTCCACTCTGGCTCAGTTGTCTGGGGCTGGGAGAAGTTCCCCTGCAGCCCAGTGTGGATCCATCTGTGAGTGGACAGCCTCTGCCACACTAGTTCTTTTGGAGCAACCCATTCTTGGCACCCCCTTCCTCAGTGCCCTAGTGGCCACTTTCAGGGACACCACAAGTTGTGTTGAGGCAGTTATGAAGTGTGGAGTTTTCATAAATCAACTGAATAAATGTTTGGAGAGTCTCCTGTTTCTGAAGCTCTGCTCACTGGCGAGTTTGGTTGAATATAACATACTCTATAGAGAACTGGCTTCCCATTTAACTAAGGAAGCTATTTGTGGTTCTTATTAAAATGTAGAAGGACAGGTGAGGCCCTGCTTCCTCAGACATGAGCTCTAGGGATGATTTGAGCCAATGGGTCTTGTTCCCTGTATGCCTGTTATAGCCATCAGCATCTCTGCAGGGAGCTCTGTAGTTGAGCTTAACAGTCTCTACAGTTAGGGATAGGGGATCAAGAGACACTGGAAGTAGGCCCAGGAGTGAAGTTCGGGTGTGAGAAACATTCCTCCTCATCTACTGCTTCTCCTTGCTGCTCCCTCCCACTTGGTTACCAAAGATAGGCGTTCCCACCGGGAGAAGGGCAAGAGAGATTCACTGTAGTATACATAGGTTCTCTCCCCTCATTACAAAGTCTGGTGTCCTGGAGTCTCTCTGTCTAGCTACTGATCAACCCCCTCCCAGCCTCTTGCCCTTTGCCCTTCTAGGGTTGAATGTTTAACCCCCAGGTATGGGTGGGCTTCAGTGGACAGTCTGTATCAGTCCCTTCTGTTGCCTGAGGAAGGCTGAGGCCAAGAGACTGAGAGCTTACATCAAACCCAGTCTCTTAATGAATATAGCACTACCTGCTTTAAGAAACCACTGATTTATTCATAGATTAATAAAACAAATTTAACTTTTTTTCCCTAGAACATCCCATTACAGCGTTCTTGGTCAGCAGGTAGCTTTCTCCATCTCGTGGCTTGCTCTCAGTCCTGTAGTTAATGCTTTACCTGCATCAGAATCCCCTAAGGCTTGTGAAATACAGATTACTGGCCTGCACAGTGGCTTATCCCTATAATCCCAGCTACTTGGGAGACTGAGGCAGGAGGATCCCTTGAGGCCAGGAGCATGTAGCATGTCTCTTAAAAAAAATTAGCTGGGCATGGTGGCCTGTGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGCAGGAAGAAGTCTTGAGCCCAGGAGTTTGAGGCTGCAGAGATATATGATCATGCCACTGCCCTCCAGCCTGGGGGACTGGAGGAAACCTCATCTCTTAAAACAAAATTACAGATTGCTGGTTCCTGGTTCCACCCCTGGAGTTTTCAATCCTGTAGGTCTGGGACGGGGCCTACATTCTCTGTCTTTCAGGTAGAAAGACCTTAAAAGAATGTACGTTTCTAACAAGAATGTACATTTACCTGAAAGACCTAAAGAATGTACATTTCTAAGTTCCTGGCTCATGCTAATACTGCTGGTCTGGAGACCTCACTTTGAGAAGCAATGCTCTGCATTAACAAGAATAGAAAAGGCAACCTCCTGTTGACTGCCTTGGCATGGAAGTGGCACACATCACCTCTATTCATGTGGACCCACTTAGGTGCCAGGCTGGGGAGGGAATGTGGCTCCAAGTCCAGCTGATCACTTCCCAATCTCTGCCATGCCTAGCAGATCCAAAGACAGCATCCTTCTGCAAAAAATCCCTGTGGAAGCCCAAGGCCTGGCACAAGCCACCATTCCTTTTAGCTGCCACGATCTTACTGGTTGTCTGTGGAAGAGGACACATGTCTTTCCTTTGTCTGGTCTCCCCCAAGAGTCCTTGTTTTACAGTAGTCTTAGATCCAGCTCAAATATCACTTTTTCAAAGACATCTTCTCTGATTCCATAGCCTTACAGTTCTTTTCCTTTTTTTGTGCTTTCTCCATCTTTCCAGATTCTCAAACCAAGAGTAATTGTGAAACTCTCCAGTGCGCTGGGACCAGGGAACCAAGGGTGTAGTCAGAGGCTGGGCAACAGGATGCCATTAGTAGTCCAGGGATGCGGTGCACCTTCATCGGCCAGGTTCTCTGGGCATTGTCACCAACTTAAAACCCTTGGGGGTGCTTTCATGGGGCCCGCCACCCTGGGAGCAATCACAGACTCAGGACTCCCAGGTCGTCCTCAAGAACAGGCAGGAGATAGAGGTGAGGGAAATGCGCCAGTTTTGCGGGGAGCTGTCGGGAGTTCCCGGCGCCATCACGTGCTACAGTGCGGTCACGTGTGCAGACGCCAGGCACATGCCGGGCTCTCGGGAACCGTCTCCGCAGCCGCCAGGTGGCACCTCCCCAGCCTCATGGCCGTCTCACGGTCGAGCCTCGATCCCCCAGCCTCATGGCCTTATGATGGCCCCCAGCCTCATGGCCTCGACCCTCCAGCCTCATGGCCGGGCGTGGGGCCCGGAACCTCCAGGCCCTCGGTCCTGAGCCGCCGCGTCCTGCTGCCGCTGCTTTTTCTGCTGCCGCTGAGCTCGGGTGAGGTGGGCGCTCCTCCGCAGCTCTACCTTCCCTCTCCCCGGCCCCAGCCCTGCTCCGCCTCCAGCTCCGTGCCTGGCCTTGGAGGCGGGGGACTGGCCCGGGGTGTGGCTGCCTACTCCTGGGTCGGGGATTTTTGCGGCCCACGCACCCCGCGGTCAGCTCTCCTCTACTACTCGCGCCCAGGACCTCGCCAGGGCGATTCCAGGATCTTAAACTCCTGCCCTCTCTGGCCTCCTCCGTCAGGGCACACCTGTCCTACAGCGCCCTGAACCAGCGGTGCGGGAACCCCTTTCGCTGCCAGTCTGGACACCGTGGCTAATGTCCCTACCACCCGAGCCGCCCTCAGGCCTCTCATAGGCTCCCCCTCCACCCCCCGCTCTGATCTTCTCATGGAGCTGAGCCCCACTGGAGACCCCACTTGGACATGCTCTTTGGCCCAGGAAAATTCTTGGTCCCCATCCACTACAGGAATATTCTAAAATTCACCTTCTTCCCAGATCCTCTATTCCAACCCAGCTTGCCTCCCTAGCAGCCCATCATTCCCTCAGAAAACACAGGCTTTGGGTGCTGTCTTCCTGAACCCAATCCCCAAACCCACAGGGGCCCCTCCAAACTGGACTGCTCAACACCACCCTCACCTACTTCTTTAGGAGTCAGAGAGGCCTGCTTCTGGTGCAGGGCCAGCGGCTCACCTGTGCCCTGCTGTGTGGGCTCTCCCTGTGCGACACTCCCTCCACCATCCTCTCTCATAGGTATCCTCTTGTTTTTGCTTTGCTGATTTTTCTCCCCCATCTCTTGCCCCTTCACTGCGAGACCTCCCAAATGTCTTCACTCCATGCTTCCTGCCAGTGCCTCCTCGCTCTCCACTTAACCCTTAGTTCCTTCCTGGGCTCTCTCCACCCTGATCATCCCTGACCTTTGTACCACCCCCTCCTCTTTCATTTTCTGTGGTCTCCTGATTCTCCTCTACCTCAAGGGTAACTCCCCCTCTCCTCTGTGTCTGTCCCATGCCACCGTGCTCTGTTCATCCCAGACGTGTTGGTGTCCCCTAAGCTGCTCTCTTTTTCCTGCTCCTCCCCTCTTAACTGCTCCCTGGGTGAACTCACTTGAGCTGCCATTTATGTGATGGTGCCTCATAAAACATGTCTGGATGTGCAGCTGCCTCCTGGACATCTCTACCTGAAAGACCTAGGAACATCTCAACCCCTTGGGGTCAATGCTGAGGTCTTCTTCTTCTTGCCAACTGACTTCTCTCATTGTTTCCTAACTAAGTGGATGGCAGCCACTTTTCTCCAAAATCAGAAACTGCGGTGTGATCCTAGACCCACCCATGTGCCTAAGTCCCCCAGACAGCTCACCGTGTCTGTTCTCACAGCCACTTCCTCATTCGGACCTCCTCATTTCTTGCCTTGGTTCTGCAGAGCCTCTGGTGGGATCTCAGTGCCTCAGTCTTGTCATCTTCCTGTCTAATATCTGGGCTGCCTATGCAAGCCTGGCTCAGTCATACCTCTGTTGATCTCCCTTTTCCCAGAGGGTCTCACCCTGGCTTCTTGGCCAGGCTTTCGAGGCCTTCATGACTGATGCCTGACTCTCCTCCCCTGGCTCATCTCTTGCCATCACAGGTCTTGCCCTTCATCCTCTGCAGTCTGGCATACACGACGATGTTTCTCCTGCAAGGAATGTGATGATCACTTTTCATTTCTGTTTACCTTCTCATCTTTAACACCTGGCACAGTAAGCCCTCCTCCCACTGAAGTGGTCTTTTCTGTCCACCACTTCTTCTGGGCTCCCCTGAAGCCTGCCACCCTGTCCCTGCACTGATCTCATGCAGGTGGTTGTGTATTTACCTCTGTCCACCCTGCTGGACACTGTATTCCTTGAGAGTAGGCTCTATTTGACACACCTCTGTCTCCCCAGCCTCTGGCTCCAGGCTGGGAACAGAGTGGGAGATTAGGACCTATTTGGTGAATGAATGAATGAACTAATTTAAAAATGCACCTCTTTGCTGTCATCCTGTCGTGAATGCTTGCTTCATCTCTGTCCCTCTTTTCTCCTCCAG
Seq C2 exon
GTTATAAAGAGGACACAACCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549:ENST00000460241:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains